Publications

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2012
Chang, C-L, Tsai P-Y, Chang Y-P, Lin K-C.  2012.  Interfacial electron transfer from CdSe/ZnS quantum dots to TiO 2 nanoparticles: Size dependence at the single-molecule level. ChemPhysChem. 13:2711-2720., Number 11 AbstractWebsite

Electron transfer (ET) kinetics of CdSe/ZnS core/shell quantum dots (QDs) on bare coverslips and a TiO 2 nanoparticle-coated thin film has been investigated at the single-molecule level. The QDs prepared have three different diameters of 3.6, 4.6, and 6.4 nm. The trajectories of fluorescence intensity are acquired with respect to the arrival time. The on-time events and subsequent fluorescence lifetimes are shorter with decreasing size. Given the lifetime measurements for QDs on glass and TiO 2, the rate constant of ET from QDs to TiO 2 may be determined to be 1.3×10 7, 6.0×10 6, and 4.7×10 6 s -1 for the increasing sizes of the QDs. The plot of on-time probability density versus arrival time is characterized by power-law statistics in the short time region and a bending tail in the long time region. Marcus's ET model is employed to satisfactorily fit the bending tail behavior and to further calculate the ET rate constants. The theoretical counterparts for the different sizes are 1.4×10 7, 6.4×10 6, and 1.9×10 6 s -1, showing good agreement with the experimental results. Going dotty: Electron transfer kinetics of CdSe/ZnS core/shell quantum dots (QDs) on bare coverslips and on TiO 2 nanoparticle coated thin films have been investigated at the single-molecule level. As the size of the QDs changes, the shift in the valence band (VB) energy is less significant than the shift in the conduction band (CB) energy. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Fan, H, Tsai P-Y, Lin K-C, Lin C-W, Yan C-Y, Yang S-W, Chang AHH.  2012.  Molecular elimination of Br2 in photodissociation of CH 2BrC(O)Br at 248 nm using cavity ring-down absorption spectroscopy. Journal of Chemical Physics. 137, Number 21 AbstractWebsite

The primary elimination channel of bromine molecule in one-photon dissociation of CH2BrC(O)Br at 248 nm is investigated using cavity ring-down absorption spectroscopy. By means of spectral simulation, the ratio of nascent vibrational population in v 0, 1, and 2 levels is evaluated to be 1:(0.5 ± 0.1):(0.2 ± 0.1), corresponding to a Boltzmann vibrational temperature of 581 ± 45 K. The quantum yield of the ground state Br2 elimination reaction is determined to be 0.24 ± 0.08. With the aid of ab initio potential energy calculations, the obtained Br2 fragments are anticipated to dissociate on the electronic ground state, yielding vibrationally hot Br2 products. The temperature-dependence measurements support the proposed pathway via internal conversion. For comparison, the Br2 yields are obtained analogously from CH3CHBrC(O)Br and (CH3)2CBrC(O)Br to be 0.03 and 0.06, respectively. The trend of Br2 yields among the three compounds is consistent with the branching ratio evaluation by Rice-Ramsperger-Kassel-Marcus method. However, the latter result for each molecule is smaller by an order of magnitude than the yield findings. A non-statistical pathway so-called roaming process might be an alternative to the Br2 production, and its contribution might account for the underestimate of the branching ratio calculations. © 2012 American Institute of Physics.

Hsing, CR, Wei CM, Chou MY.  2012.  Quantum Monte Carlo investigations of adsorption energetics on graphene. JOURNAL OF PHYSICS-CONDENSED MATTER. 24:395002. AbstractWebsite

We have performed calculations of adsorption energetics on the graphene surface using the state-of-the-art diffusion quantum Monte Carlo method. Two types of configurations are considered in this work: the adsorption of a single O, F, or H atom on the graphene surface and the H-saturated graphene system (graphane). The adsorption energies are compared with those obtained from density functional theory with various exchange-correlation functionals. The results indicate that the approximate exchange-correlation functionals significantly overestimate the binding of O and F atoms on graphene, although the preferred adsorption sites are consistent. The energy errors are much less for atomic hydrogen adsorbed on the surface. We also find that a single O or H atom on graphene has a higher energy than in the molecular state, while the adsorption of a single F atom is preferred over the gas phase. In addition, the energetics of graphane is reported. The calculated equilibrium lattice constant turns out to be larger than that of graphene, at variance with a recent experimental suggestion.

Kasai, T, Che D-C, Tsaia P-Y, Lina K-C.  2012.  Reaction dynamics with molecular beams and oriented molecular beams: A tool for looking closer to chemical reactions and photodissociations. Journal of the Chinese Chemical Society. 59:567-582., Number 5 AbstractWebsite

Experimental studies on reaction dynamics by use of molecular beams and oriented molecular beams are reviewed in order for looking closer to chemical reactions as well as photodissociations at the molecular level. We discuss about versatility and usefulness of the electrostatic hexapole sate-selector as a non-destructive selector for molecular structure analysis. Some experimental evidences on novel reaction dynamics in photodissociation and stereodynamics are presented followed by concluding remarks and future perspectives for controlling chemical reactions from the point of view of green chemistry, by manipulating molecular orientation without any catalyst nor by applying any external forces like intense electromagnetic field. © 2012 The Chemical Society Located in Taipei & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Tsai, P-Y, Lin K-C.  2012.  Rotational energy transfer of SH(X 2 Π, v′=0, J′=0.5-10.5) by collision with Ar: λ-doublet resolved transition propensity. ChemPhysChem. 13:274-280., Number 1 AbstractWebsite

The behavior of λ-doublet resolved rotational energy transfer (RET) by Ar collisions within the SH(X 2Π, v′=0) state is characterized. The matrix elements of terms in the interaction potential responsible for interference effects are calculated to explain the propensity rules for collision-induced transitions within and between spin-orbit manifolds. In this manner, the physical mechanisms responsible for the F 1-F 1, F 2-F 2, and F 1-F 2 transitions may be reasonably identified. As collision energy increases, the propensity for collisional population of the final e or f level is replaced by the e/f-conserving propensity. Such a change in propensity rule can be predicted in terms of energy sudden approximation at high J limit for the pure Hund's case scheme. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Chang, TC, Chu JF, Tsai YL, Wang ZF.  2012.  Structure conversion and structure separation of G-quadruplexes investigated by carbazole derivatives. Curr Pharm Des. 18:2002-13., Number 14 AbstractWebsite

The challenge of G-quadruplexes is that the G-rich sequences can adopt various G4 structures and possibly interconvert among them, particularly under the change of environmental conditions. Both NMR and circular dichroism (CD) show the spectral conversion of d[AG3(T2AG3)3] (HT22) from Na-form to K-form after Na+/K+ ion exchange. No appreciable change on the induced CD spectra of BMVC molecule and the single molecule tethered particle motion of HT22 in Na+ solution upon K+ titration suggests that the spectral conversion is unlikely due to the structural conversion via fully unfolded intermediate. Although a number of mechanisms were proposed for the spectral change induced by the Na+/K+ ion exchange, determining the precise structures of HT22 in K+ solution may be essential to unravel the mechanism of the structural conversion. Thus, development of a new method for separating different structures is of critical importance for further individual verification. In the second part of this review, we describe a new approach based on "micelle-enhanced ultrafiltration" method for DNA structural separation. The BMVC, a G-quadruplex ligand, is first modified and then forms a large size of emulsion after ultrasonic emulsification, together with its different binding affinities to various DNA structures; for the first time, we are able to separate different DNA structures after membrane filtration. Verification of the possible structural conversion and investigation of structural diversity among various G4 structures are essential for exploring their potential biological roles and for developing new anticancer drugs.

Shishido, R, Kuo J-L, Fujii A.  2012.  Structures and Dissociation Channels of Protonated Mixed Clusters around a Small Magic Number: Infrared Spectroscopy of ((CH3)3N)n–H+–H2O (n = 1–3). The Journal of Physical Chemistry A. 116:6740-6749., Number 25 AbstractWebsite

The magic number behavior of ((CH3)3N)n–H+–H2O clusters at n = 3 is investigated by applying infrared spectroscopy to the clusters of n = 1–3. Structures of these clusters are determined in conjunction with density functional theory calculations. Dissociation channels upon infrared excitation are also measured, and their correlation with the cluster structures is examined. It is demonstrated that the magic number cluster has a closed-shell structure, in which the water moiety is surrounded by three (CH3)3N molecules. The ion core (protonated site) of the clusters is found to be (CH3)3NH+ for n = 1–3, but coexistence of an isomer of the H3O+ ion core cannot be ruled out for n = 3. Large rearrangement of the cluster structures of n = 2 and 3 before dissociation, which has been suggested in the mass spectrometric studies, is confirmed on the basis of the structure determination by infrared spectroscopy.

2011
Tsai, YL, Wang ZF, Chen WW, Chang TC.  2011.  Emulsified BMVC derivative induced filtration for G-quadruplex DNA structural separation, Sep 1. Nucleic Acids Res. 39:e114., Number 17 AbstractWebsite

A novel method based on emulsion/filtration is introduced for G-quadruplex DNA structural separation. We first synthesized a lipophilic analogue of BMVC, 3,6-Bis(1-methyl-4-vinylpyridinium)-9-(12'-bromododecyl) carbazole diiodide (BMVC-12C-Br), which can form an oil-in-water (o/w) phase emulsion. Due to the binding preferences of BMVC-12C-Br emulsion to some specific DNA structures, the large emulsion ( approximately 2 microm) bound DNA was separated from the small free DNA in the filtrate by a 0.22 microm pore size MCE membrane. This method is able to isolate the non-parallel G-quadruplexes from the parallel G-quadruplexes and the linear duplexes from both G-quadruplexes. In addition, this method allows us not only to determine the absence of the parallel G-quadruplexes of d(T(2)AG(3))(4) and the presence of the parallel G-quadruplexes of d(T(2)AG(3))(2) in K(+) solution, but also to verify structural conversion from antiparallel to parallel G-quadruplexes of d[AG(3)(T(2)AG(3))(3)] in K(+) solution under molecular PEG condition. Moreover, this emulsion can separate the non-parallel G-quadruplexes of d(G(3)CGCG(3)AGGAAG(5)CG(3)) monomer from the parallel G-quadruplexes of its dimer in K(+) solution. Together with NMR spectra, one can simplify the spectra for both the free DNA and the bound DNA to establish a spectrum-structure correlation for further structural analysis.

Wang, Y, Zhang F, Stumpf R, Lin P, Chou MY.  2011.  Catalytic effect of near-surface alloying on hydrogen interaction on the aluminum surface, May. Physical Review B. 83:5., Number 19 AbstractWebsite

A small amount of catalyst, such as Ti, was found to greatly improve the kinetics of hydrogen reactions in the prototypical hydrogen storage compound sodium alanate (NaAlH(4)). We propose a near-surface alloying mechanism for the rehydrogenation cycle based on a detailed analysis of available experimental data as well as first-principles calculations. The calculated results indicate that the catalyst remains at subsurface sites near the Al surface, reducing the dissociation energy barrier of H(2). The binding between Ti and Al modifies the surface charge distribution, which facilitates hydrogen adsorption and enhances hydrogen mobility on the surface.

Shiau, BW, Wu MC, Lin CC, Chen YC.  2011.  Low-Light-Level Cross-Phase Modulation with Double Slow Light Pulses, May. Physical Review Letters. 106:4., Number 19 AbstractWebsite

We report on the first experimental demonstration of low-light-level cross-phase modulation (XPM) with double slow light pulses based on the double electromagnetically induced transparency (EIT) in cold cesium atoms. The double EIT is implemented with two control fields and two weak fields that drive populations prepared in the two doubly spin-polarized states. Group velocity matching can be obtained by tuning the intensity of either of the control fields. The XPM is based on the asymmetric M-type five-level system formed by the two sets of EIT. Enhancement in the XPM by group velocity matching is observed. Our work advances studies of low-light-level nonlinear optics based on double slow light pulses.

Lin, CT, Tseng TY, Wang ZF, Chang TC.  2011.  Structural Conversion of Intramolecular and Intermolecular G-Quadruplexes of bcl2mid: The Effect of Potassium Concentration and Ion Exchange, Mar 17. Journal of Physical Chemistry B. 115:2360-2370., Number 10 AbstractWebsite

The gel assay, circular dichroism, and differential scanning calorimetry results all demonstrate that a major monomer component of bcl2mid exists at low [K(+)] and an additional dimer component appears at high [K(+)]. This implies that bcl2mid is a good candidate for elucidating the mechanisms of structural conversion between different G-quadruplexes. We further discovered that the conversion between the monomer and dimer forms of bcl2mid does not occur at room temperature but is detected when heated above the melting point. In addition, the use of the lithium cation to keep the same ionic strength in a K(+) solution favors the formation of the bcl2mid dimer. We also found that the bcl2mid dimer is more stable than the monomer. However, after the bcl2mid monomer is formed in a K(+) solution, there is no appreciable structural conversion from the monomer to the dimer detected with addition of Li(+) at room temperature. Furthermore, the spectral changes of bcl2mid when transitioning from sodium form to potassium form take place upon K(+) titration. The absence of the dimer form for bcl2mid after the direct addition of 150 mM [K(+)] at room temperature suggests that the spectral changes are not due to rapid unfolding and refolding. In addition, this work reveals the conditions that would be useful for NMR studies of G-quadruplexes.

Yan, JA, Ruan WY, Chou MY.  2011.  Enhanced optical conductivity induced by surface states in ABC-stacked few-layer graphene, Jun. Physical Review B. 83:6., Number 24 AbstractWebsite

The surface states of ABC-stacked few-layer graphene ( FLG) are studied based on density-functional theory. These states form flat bands near the Fermi level, with the k-space range increasing with the layer number. Based on a tight-binding model, the characteristics of these surface states and their evolution with respect to the number of layers are examined. The infrared optical conductivity is then calculated within the single-particle excitation picture. We show that the surface states introduce unique peaks at around 0.3 eV in the optical conductivity spectra of ABC-stacked FLG when the polarization is parallel to the sheets, in good agreement with recent experimental measurement. Furthermore, as the layer number increases, the absorption amplitude is greatly enhanced and the peak position redshifts, which provides a feasible way to identify the number of layers for ABC-stacked FLG using optical conductivity measurements.

Chu, JF, Wang ZF, Tseng TY, Chang TC.  2011.  A Novel Method for Screening G-quadruplex Stabilizers to Human Telomeres, Jun. Journal of the Chinese Chemical Society. 58:296-300., Number 3 AbstractWebsite

We present a simple method based on the Cu(2+) induced unfolding of G-quadruplex (G4) of human telomere sequence d[AG(3)(T(2)AG(3))(3)] to screen a number of 3,6-bis(1-methyl-4-vinylpyridinium)carbazole diiodide (BMVC) analogues for better G4 stabilizers. Using circular dichroism (CD), the screening results suggest that the tri-cations of 9-substituted BMVC derivatives are better G4 stabilizers than the bi-cations of BMVC. In addition, 3,6-bis(1-methyl-4-vinylpyrazinium)carbazole diiodide (BMVC4) is likely a better core molecule than BM VC for G4 stabilizers.

Yang, L, Chou MY.  2011.  Lattice Vibrational Modes and their Frequency Shifts in Semiconductor Nanowires, Jul. Nano Letters. 11:2618-2621., Number 7 AbstractWebsite

We have performed first-principles calculations to study the lattice vibrational modes and their Raman activities in silicon nanowires (SiNWs). Two types of characteristic vibrational modes are examined: high-frequency optical modes and low-frequency confined modes. Their frequencies have opposite size dependence with a red shift for the optical modes and a blue shift for the confined modes as the diameter of SiNWs decreases. In addition, our calculations show that these vibrational modes can be detected by Raman scattering measurements, providing an efficient way to estimate the size of SiNWs.

Lee, CM, Lee RCH, Ruan WY, Chou MY.  2011.  Low-lying spectra of massless Dirac electron in magnetic dot and ring (vol 96, 212101, 2010), Jul. Applied Physics Letters. 99:1., Number 1 AbstractWebsite
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Chien, CH, Chen WW, Wu JT, Chang TC.  2011.  Label-free imaging of Drosophila in vivo by coherent anti-Stokes Raman scattering and two-photon excitation autofluorescence microscopy, Jan. Journal of Biomedical Optics. 16, Number 1 AbstractWebsite

Drosophila is one of the most valuable model organisms for studying genetics and developmental biology. The fat body in Drosophila, which is analogous to the liver and adipose tissue in human, stores lipids that act as an energy source during its development. At the early stages of metamorphosis, the fat body remodeling occurs involving the dissociation of the fat body into individual fat cells. Here we introduce a combination of coherent anti-Stokes Raman scattering (CARS) and two-photon excitation autofluorescence (TPE-F) microscopy to achieve label-free imaging of Drosophila in vivo at larval and pupal stages. The strong CARS signal from lipids allows direct imaging of the larval fat body and pupal fat cells. In addition, the use of TPE-F microscopy allows the observation of other internal organs in the larva and autofluorescent globules in fat cells. During the dissociation of the fat body, the findings of the degradation of lipid droplets and an increase in autofluorescent globules indicate the consumption of lipids and the recruitment of proteins in fat cells. Through in vivo imaging and direct monitoring, CARS microscopy may help elucidate how metamorphosis is regulated and study the lipid metabolism in Drosophila. (C) 2011 Society of Photo-Optical Instrumentation Engineers (SPIE). [DOI: 10.1117/1.3528642]

Zhang, F, Wang Y, Chou MY.  2011.  Stability of the hydrogen-storage compound Li(6)Mg(NH)(4) from first principles, Jan. Physical Review B. 83:4., Number 1 AbstractWebsite

It has been demonstrated that replacing Li(2)NH with the mixed imide Li(2)Mg(NH)(2) improves the reaction conditions for the hydrogen-storage system Li(2)NH + H(2) <-> LiNH(2) + LiH, at the expense of reducing the gravitational hydrogen capacity from 6.5% to 5.6%. In this article, we report from first-principles calculations a possible mixed imide Li(6)Mg(NH)(4) that has less Mg concentration and higher gravimetric capacity for hydrogen storage than Li(2)Mg(NH)(2). We find that Li(6)Mg(NH)(4) is thermodynamically more stable than the phase-separated mixture of Li(2)Mg(NH)(2) and Li(2)NH over a large temperature range. The reaction LiH + 1/4Mg(NH(2))(2) + 1/2LiNH(2) <-> 1/4Li(6)Mg(NH)(4) + H(2) can be completed via two steps and releases 6.0 wt % hydrogen in total, at a temperature about 40 degrees C lower than that for the cycling between LiNH(2) and Li(2)NH.

Liu, HJ, Chou JP, Li RW, Wei CM, Miki K.  2011.  Trimeric precursors in formation of Al magic clusters on a Si(111)-7 x 7 surface, Feb. Physical Review B. 83:6., Number 7 AbstractWebsite

The formation process of Al magic clusters on the Si(111)-7 x 7 surface was investigated by means of a variable-temperature scanning tunneling microscope (STM) in situ and was interpreted using density-functional theory (DFT) calculations. At a growth temperature of 450 degrees C, Al atoms hopped among the corner, center, and T4 sites and also across the dimer rows on the Si(111)-7 x 7 surface. At low coverage below 0.08 ML, a single Al atom was adsorbed on the corner or center site. When the coverage was increased to 0.08 ML, Al dimers and trimers appeared, and Al magic clusters were also observed. However, no Al tetramers or pentamers were experimentally confirmed. Careful analysis of STM images suggests that Al trimers could be key precursors for the formation of Al magic clusters, and DFT calculations verified this interpretation. Total-energy calculation results using DFT reveal that this is due to the small energy gain from Al trimer to Al tetramer. These results are important for understanding the atomic structure and the formation mechanism of the magic clusters on the Si(111)-7 x 7 surface.

Jungthawan, S, Limpijumnong S, Kuo J-L.  2011.  Electronic structures of graphene/boron nitride sheet superlattices, Dec. Phys. Rev. B. 84:235424.: American Physical Society AbstractWebsite
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Gruznev, DV, Matetskiy AV, Zotov AV, Saranin AA, Chou JP, Wei CM, Wang YL.  2011.  Interplay between adsorbed C-60 fullerenes and point defects on a Si(111)root 3 x root 3-In reconstructed surface, Dec. Surface Science. 605:2050-2054., Number 23-24 AbstractWebsite

Adsorption of C-60 onto Si(111)root 3 x root 3-In surface presents a fascinating example of interplay between molecular adsorbate and surface structural defects. It has been found that adsorbing C-60 molecules are trapped by the substitutional Si-defects. In turn, the group of a few adsorbed C-60 can act as a trap for the mobile vacancies of the root 3 x root 3-In reconstruction. Namely, adsorbed C-60 induces a strain in the indium layer, and when a mobile vacancy happens to get into the surface area surrounded by fullerenes, the In atoms between the C-60 and the vacancy shift from the T-4 to the H-3 sites, fixing a vacancy in a given location. (C) 2011 Elsevier B.V. All rights reserved.

Lin, PY, Shiau BW, Hsiao YF, Chen YC.  2011.  Creation of arbitrary spectra with an acousto-optic modulator and an injection-locked diode laser, Aug. Review of Scientific Instruments. 82:6., Number 8 AbstractWebsite

We use a double-passed acousto-optic modulator (AOM), driven by an arbitrary waveform generator to produce multiple frequency components for a laser with arbitrary frequency spacings. A programmed sequence containing various sections of radio-frequency sinusoidal signal at different frequency is applied to drive the AOM. The diffracted light is used to injection-lock a diode laser. The combined techniques allow us to generate the multi-line spectra for the diode laser with arbitrary frequency spacings in the range of 100 MHz at a relatively high output power of 80 mW and a small power variation of 2%. Such a light source can be used in the application for laser cooling of molecules. (C) 2011 American Institute of Physics. [doi:10.1063/1.3626903]

Xian, L, Barraza-Lopez S, Chou MY.  2011.  Effects of electrostatic fields and charge doping on the linear bands in twisted graphene bilayers, Aug. Physical Review B. 84:6., Number 7 AbstractWebsite

A twisted graphene bilayer consists of two graphene monolayers rotated by an angle. with respect to each other. Theory predicts that charge-neutral twisted graphene bilayers display a drastic reduction of their Fermi velocity v(F) for 0 less than or similar to 0 less than or similar to 20 degrees and 40 less than or similar to 0 less than or similar to 60 degrees. In this paper we present evidence for an additional anisotropic reduction of v(F) in the presence of external electrostatic fields. We also discuss in quantitative detail velocity renormalization for other relevant bands in the vicinity of the K point. Except for a rigid energy shift, electrostatic fields and doping by metal atoms give rise to similar renormalization of the band structure of twisted graphene bilayers.

Lai, MY, Chou JP, Utas OA, Denisov NV, Kotlyar VG, Gruznev D, Matetsky A, Zotov AV, Saranin AA, Wei CM, Wang YL.  2011.  Broken Even-Odd Symmetry in Self-Selection of Distances between Nanoclusters due to the Presence or Absence of Topological Solitons, Apr. Physical Review Letters. 106:4., Number 16 AbstractWebsite

Depositing particles randomly on a 1D lattice is expected to result in an equal number of particle pairs separated by even or odd lattice units. Unexpectedly, the even-odd symmetry is broken in the self-selection of distances between indium magic-number clusters on a Si(100)-2 x 1 reconstructed surface. Cluster pairs separated by even units are less abundant because they are linked by silicon atomic chains carrying topological solitons, which induce local strain and create localized electronic states with higher energy. Our findings reveal a unique particle-particle interaction mediated by the presence or absence of topological solitons on alternate lattices.

Lo, HY, Chen YC, Su PC, Chen HC, Chen JX, Yu IA, Chen YF.  2011.  Electromagnetically-induced-transparency-based cross-phase-modulation at attojoule levels, Apr. Physical Review A. 83:4., Number 4 AbstractWebsite

We report the experimental demonstration of electromagnetically-induced-transparency-based cross-phase-modulation at attojoule or, equivalently, few-hundred-photon levels. A phase shift of 0.005 rad of a probe pulse modulated by a signal pulse with an energy of similar to 100 aJ, equivalent to similar to 400 photons, was observed in a four-level system of cold (87)Rb atoms.

Zheng, AM, Huang SJ, Liu SB, Deng F.  2011.  Acid properties of solid acid catalysts characterized by solid-state P-31 NMR of adsorbed phosphorous probe molecules. Physical Chemistry Chemical Physics. 13:14889-14901.c1cp20417c.pdf