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Chao, M-H, Lin Y-T, Dhenadhayalan N, Lee H-L, Lee H-Y, Lin K-C.  2017.  3D Probed Lipid Dynamics in Small Unilamellar Vesicles. Small. 13, Number 13 AbstractWebsite

Single-molecule fluorescence correlation spectroscopy overcomes the resolution barrier of optical microscopy (10≈–20 nm) and is utilized to look into lipid dynamics in small unilamellar vesicles (SUVs; diameter < 100 nm). The fluorescence trajectories of lipid-like tracer 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindodicarbocyanine (DiD) in the membrane bilayers are acquired at a single-molecule level. The autocorrelation analysis yields the kinetic information on lipid organization, oxygen transport, and lateral diffusion in SUVs' membrane. First, the isomerization feasibility may be restricted by the addition of cholesterols, which form structure conjugation with DiD chromophore. Second, the oxygen transport is prevented from the ultrasmall cluster and cholesterol-rich regions, whereas it can pass through the membrane region with liquid-disordered phase (Ld) and defects. Third, by analyzing 2D spectra correlating the lipid diffusion coefficient and triplet-state lifetime, the heterogeneity in lipid bilayer can be precisely visualized such as lipid domain with different phases, the defects of lipid packing, and DiD-induced “bouquet” ultrasmall clusters. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

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Veerakumar, P, Rajkumar C, Chen S-M, Thirumalraj B, Lin K-C.  2018.  Activated porous carbon supported rhenium composites as electrode materials for electrocatalytic and supercapacitor applications. Electrochimica Acta. 271:433-447. AbstractWebsite

In this study, we developed highly dispersed rhenium nanoparticles decorated on activated carbon (Re@CDACs). The activated carbons were derived from the biomass raw materials cardamom pods (Elettaria cardamomum L) via carbonization followed by activation with ZnCl2 at high temperature. The Re NPs synthesis was achieved by decomposition of [Re2(CO)10] complex via a facile microwave thermal reduction technique. The as-prepared Re@CDACs nanocomposites were characterized by a combination of state-of-the-art techniques. The Re@CDACs nanocomposites so prepared were utilized for electrocatalytic oxidation of sunset yellow (SY) and supercapacitor applications. The Re@CDACs-modified electrodes were found to show extraordinary electrochemical performance for sensitive and selective detection of SY with a wide linear range of 0.05–390 μM and a detection limit and sensitivity of 16 nM (S/N = 3) and 91.53 μA μM−1, respectively, surpassing other modified electrodes. Moreover, these Re@CDACs catalysts were also found to exhibit a higher specific capacitance of 181 F g-1 at a current density of 1.6 A g−1 in 1.0 M H2SO4 electrolyte. The specific capacitance retention of 90% was achieved after 2500 cycles at current density 2.0 A g−1. Therefore, we have demonstrated that the Re@CDACs nanocomposite materials could be used as a promising electrode material in electrochemical oxidation of SY and energy storage applications. © 2018

Palazzetti, F, Tsai P-Y, Lombardi A, Nakamura M, Che D-C, Kasai T, Lin K-C, Aquilanti V.  2013.  Aligned molecules: Chirality discrimination in photodissociation and in molecular dynamics. Rendiconti Lincei. 24:299-308., Number 3 AbstractWebsite

Emergence of biochemical homochirality is an intriguing topic, and none of the proposed scenarios has encountered a unanimous consensus. Candidates for naturally occurring processes, which may originate chiral selection, involve interaction of matter with light and molecular collisions. We performed and report here: (1) simulations of photodissociation of an oriented chiral molecule by linearly polarized (achiral) light observing that the angular distribution of the photofragments is characteristic of each enantiomer and both differ from the racemic mixture; and (2) molecular dynamics simulations (elastic collisions of oriented hydrogen peroxide, one of the most simple chiral molecules, with Ne atom) demonstrating that the scattering and the recoil angles are specific of the enantiomeric form. The efficacy of non-chiral light (in the case of photodissociation) and of non-chiral projectile (in the case of collisions) is due to the molecular orientation, as an essential requirement to observe chiral effects. The results of the simulations, that we report in this article, provide the background for the perspective realization of experiments which go beyond the well-documented ones involving interaction of circularly polarized laser (chiral light) with the matter, specifically by making use of non-chiral, i.e. linearly polarized or unpolarized light sources, and also by obtaining chiral effects with no use at all of light, but simply inducing them by molecular collisions. The case of vortices is discussed in a companion paper. © 2013 Accademia Nazionale dei Lincei.

Nakamura, M, Che D-C, Tsai P-Y, Lin K-C, Kasai T.  2013.  Alignment selection of the metastable CO(a 3π1) molecule and the steric effect in the aligned CO(a 3π1) + NO collision. Journal of Physical Chemistry A. 117:8157-8162., Number 34 AbstractWebsite

The aligned metastable CO(a 3π1) molecular beam was generated by an electronic excitation through the Cameron band (CO a 3Π1 ← X 1Σ+) transition. Beam characterization of the aligned molecular beam of CO(a 3Π1) was carried out by (1 + 1) REMPI detection via the b 3Σ+ state. The REMPI signals showed the clear dependence on the polarization of the pump laser, and the experimental result was well reproduced by the theoretical simulation. This agreement confirms that aligned metastable CO(a 3Π1) can be generated and controlled by rotating polarization of the pump laser. By using this technique, a single quantum state of CO(a 3Π1) can be selected as a metastable molecular beam. The steric effect in the energy-transfer collision of CO(a 3Π1) with NO forming the excited NO was carried out with this aligned CO(a 3Π1) molecular beam. We find that the sideways orientation of CO(a 3Π1) is more favorable in the formation of the excited NO(A 2Σ+, B 2Π) than that for the axial collisions. The obtained steric effect was discussed with the aid of the spatial distribution of CO(a 3Π1) molecular orbitals, and we find that specific rotational motion of CO(a 3Π1) in each state may not be a dominant factor in this energy-transfer collision. © 2013 American Chemical Society.

Lin, K-C, Nakamura M, Yang, S. J, Kasai T, Che D-C, Lombardi A, Palazzetti F, Aquilanti V.  2017.  Angular distribution of bromine atomic photofragment in oriented 2-bromobutane via hexapole state selector. AIP Conference Proceedings. 1906 Abstract

In this work, an asymmetric top molecule 2-bromobutane has been successfully oriented by using hexapole state selector combined with orientation field, followed by detection of the bromine atomic photofragment distribution in the photolysis. The photofragment is produced in both the ground Br (2P3/2) and the excited Br (2P1/2) electronic states and both channels are studied by the slice imaging technique, revealing new features in the stereodynamic vectorial properties with respect to previous investigations on non-oriented molecules. © 2017 Author(s).

Dhenadhayalan, N, Sriram MI, Lin K-C.  2018.  Aptamer-based fluorogenic sensing of interferon-gamma probed with ReS2 and TiS2 nanosheets. Sensors and Actuators, B: Chemical. 258:929-936. AbstractWebsite

The fluorogenic aptamer sensing of interferon-gamma (IFN-γ) was scrutinized using two-dimensional (2D) ReS2 and TiS2 nanosheets (NSs) as a platform. The IFN-γ an important cytokine, functions as a bio-indicator to detect infectious diseases such as tuberculosis and human immunodeficiency virus. This 2D NSs based aptamer sensor was implemented to induce the fluorescence off/on resulting from an aptamer, in the absence or presence of a target to be probed. The fluorescence emitting from the aptamer is quenched by interacting with NSs, while the ensuing fluorescence is recovered upon addition of target. Such a fluorescence off/on mechanism was proposed based on the behavior of fluorescence resonance energy transfer (FRET) between the aptamer and NSs. The fluorescence response exhibits linearity as a function of target, and the detection limit of IFN-γ was evaluated to be 57.6 and 82.7 pM for ReS2 and TiS2 NSs, respectively, being comparable to or even better than those methods adopted for probing IFN-γ. The selectivity property was also characterized with various targets, exhibiting a very specific selectivity for IFN-γ. The findings reveal that the aptamer-transition metal dichalcogenides (TMD) NSs will be a great sensing pair to the development of aptamer-based biosensors. Moreover, the biocompatibility and sensing capability of IFN-γ was implemented in human embryonic kidney 293T (HEK) live cells. This is the first report to emerging fluorogenic sensing of IFN-γ aptamer with 2D TMD, showing a promising trend for future design of biosensors. © 2017 Elsevier B.V.

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Manavalan, S, Veerakumar P, Chen S-M, Murugan K, Lin K-C.  2019.  Binder-Free Modification of a Glassy Carbon Electrode by Using Porous Carbon for Voltammetric Determination of Nitro Isomers. ACS Omega. 4(5):8907-8918. AbstractWebsite

In this study, Liquidambar formosana tree leaves have been used as a renewable biomass precursor for preparing porous carbons (PCs). The PCs were produced by pyrolysis of natural waste of leaves after 10% KOH activation under a nitrogen atmosphere and characterized by a variety of state-of-the-art techniques. The PCs possess a large surface area, micro-/mesoporosity, and functional groups on its surface. A glassy carbon electrode modified with high PCs was explored as an efficient binder-free electrocatalyst material for the voltammetric determination of nitro isomers such as 3-nitroaniline (3-NA) and 4-nitroaniline (4-NA). Under optimal experimental conditions, the electrochemical detection of 3-NA and 4-NA was found to have a wide linear range of 0.2-115.6 and 0.5-120 μM and a low detection limit of 0.0551 and 0.0326 μM, respectively, with appreciable selectivity. This route not only enhanced the benefit from biomass wastes but also reduced the cost of producing electrode materials for electrochemical sensors. Additionally, the sensor was successfully applied in the determination of nitro isomers even in the presence of other common electroactive interference and real samples analysis (beverage and pineapple jam solutions). Therefore, the proposed method is simple, rapid, stable, sensitive, specific, reproducible, and cost-effective and can be applicable for real sample detection. © 2019 American Chemical Society.

Veerakumar, P, Thanasekaran P, Lin K-C, Liu S-B.  2017.  Biomass Derived Sheet-like Carbon/Palladium Nanocomposite: An Excellent Opportunity for Reduction of Toxic Hexavalent Chromium. ACS Sustainable Chemistry and Engineering. 5:5302-5312., Number 6 AbstractWebsite

Palladium nanoparticles (Pd NPs) immobilized on a garlic skin-derived activated carbons (GACs) is reported. The morphology, structure, surface compositions, and textural properties of the GACs and Pd@GAC catalyst were investigated by a variety of physicochemical characterization techniques, which revealed a dispersion of Pd NPs with average particle size of ca. 21 nm on sheet-like graphitized GACs with surface areas and pore volumes as high as 1836 m2 g-1 and 0.89 cm3 g-1, respectively. As a result, the Pd@GAC with a Pd loading of ca. 1-2 wt% exhibited superior activity for catalytic reduction of toxic Cr(VI) to Cr(III) surpassing most metal-based catalysts reported in the literature. As evidenced by a comprehensive UV-vis spectrophotometric study, the eco-friendly Pd@GAC catalyst reported herein, which can be facilely prepared with biowaste feedstocks, also showed excellent catalytic performances for efficient reduction of Cr(VI) with extraordinary stability and recyclability over at least five repeated catalytic test cycles. © 2017 American Chemical Society.

Veerakumar, P, Panneer Muthuselvam I, Hung C-T, Lin K-C, Chou F-C, Liu S-B.  2016.  Biomass-Derived Activated Carbon Supported Fe3O4 Nanoparticles as Recyclable Catalysts for Reduction of Nitroarenes. ACS Sustainable Chemistry and Engineering. 4:6772-6782., Number 12 AbstractWebsite

Highly porous beetroot-derived activated carbons incorporated with well-dispered magnetite nanoparticles (Fe3O4 NPs; average size ca. 3.8 ± 0.5 nm) were fabricated via a microwave-assisted synthesis route. The magnetic Fe3O4@BRAC catalysts so-fabricated were characterized by a variety of diffent physicochemical teniques, viz. XRD, FE-TEM, VSM, gas physisorption/chemisorption, TGA, XPS, Raman, ICP-AES, and FT-IR spectroscopy. The as-prepared catalysts were exploited for heterogeneous-phase reduction of a series of nitroaromatics (RNO2; R = H, OH, NH2, CH3, and COOH) under KOH as a base, isopropyl alcohol acting as a hydrogen donor as well as solvent and also tested with other solvents. The reaction system not only exhibits excellent activity with high anilines yield but also represents a green and durable catalytic process, which facilitates facile operation, easy separation, and catalyst recycle. © 2016 American Chemical Society.

Wu, C-C, Lin H-C, Chang Y-B, Tsai P-Y, Yeh Y-Y, Fan H, Lin K-C, Francisco JS.  2011.  Br 2 molecular elimination in photolysis of (COBr) 2 at 248 nm by using cavity ring-down absorption spectroscopy: A photodissociation channel being ignored. Journal of Chemical Physics. 135, Number 23 AbstractWebsite

A primary dissociation channel of Br 2 elimination is detected following a single-photon absorption of (COBr) 2 at 248 nm by using cavity ring-down absorption spectroscopy. The technique contains two laser beams propagating in a perpendicular configuration. The tunable laser beam along the axis of the ring-down cell probes the Br 2 fragment in the B 3Π + ou-X 1Σ g + transition. The measurements of laser energy- and pressure-dependence and addition of a Br scavenger are further carried out to rule out the probability of Br 2 contribution from a secondary reaction. By means of spectral simulation, the ratio of nascent vibrational population for v = 0, 1, and 2 levels is evaluated to be 1:(0.65 ± 0.09):(0.34 ± 0.07), corresponding to a Boltzmann vibrational temperature of 893 ± 31 K. The quantum yield of the ground state Br 2 elimination reaction is determined to be 0.11 ± 0.06. With the aid of ab initio potential energy calculations, the pathway of molecular elimination is proposed on the energetic ground state (COBr) 2 via internal conversion. A four-center dissociation mechanism is followed synchronously or sequentially yielding three fragments of Br 2 + 2CO. The resulting Br 2 is anticipated to be vibrationally hot. The measurement of a positive temperature effect supports the proposed mechanism. © 2011 American Institute of Physics.

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Lee, T.-Y., JTLCVSTPK.  2020.  Carbon dot nanoparticles exert inhibitory effects on human platelets and reduce mortality in mice with acute pulmonary thromboembolism. AbstractWebsite

The inhibition of platelet activation is considered a potential therapeutic strategy for the treatment of arterial thrombotic diseases; therefore, maintaining platelets in their inactive state has garnered much attention. In recent years, nanoparticles have emerged as important players in modern medicine, but potential interactions between them and platelets remain to be extensively investigated. Herein, we synthesized a new type of carbon dot (CDOT) nanoparticle and investigated its potential as a new antiplatelet agent. This nanoparticle exerted a potent inhibitory effect in collagen-stimulated human platelet aggregation. Further, it did not induce cytotoxic effects, as evidenced in a lactate dehydrogenase assay, and inhibited collagen-activated protein kinase C (PKC) activation and Akt (protein kinase B), c-Jun N-terminal kinase (JNK), and p38 mitogen-activated protein kinase (MAPK) phosphorylation. The bleeding time, a major side-effect of using antiplatelet agents, was unaffected in CDOT-treated mice. Moreover, our CDOT could reduce mortality in mice with ADP-induced acute pulmonary thromboembolism. Overall, CDOT is effective against platelet activation in vitro via reduction of the phospholipase C/PKC cascade, consequently suppressing the activation of MAPK. Accordingly, this study affords the validation that CDOT has the potential to serve as a therapeutic agent for the treatment of arterial thromboembolic disorders. © 2020 by the authors.

Veerakumar, P, Salamalai K, Dhenadhayalan N, Lin K-C.  2019.  Catalytic Activity of Bimetallic (Ruthenium/Palladium) Nano-alloy Decorated Porous Carbons Toward Reduction of Toxic Compounds. Chemistry - An Asian Journal. 14(15):2662-2675. AbstractWebsite

Chicken feather-derived high-surface-area porous activated carbon (CFAC) material was prepared using chemical activation. A new composite composed of Ru-Pd nanoparticles supported on CFAC (Ru-Pd@CFAC) has been prepared by microwave-thermal reduction in the presence of the support. Characterization by XRD, Raman, BET, FE-SEM/TEM, FT-IR, TGA, XPS, HAADF-STEM-EDS, H2-chemisorption, H2-TPR, and ICP-AES was used to analyze the catalyst. This catalyst is found to be efficient for the reduction of hexavalent chromium (CrVI), potassium ferricyanide (K3[Fe(CN)6]), 4-nitrophenol (4-NP), and pendimethalin (PDM), at room temperature, and remains stable, even after several repeated runs. Moreover, it showed excellent catalytic activity compared with the monometallic counterparts. © 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim

Paredes-Roibás, D, Balaganesh M, Kasai T, Gavira-Vallejo JM, Lin KC.  2018.  Cavity Ring-Down Absorption Spectroscopy: Optical Characterization of ICl Product in Photodissociation of CH2ICl at 248 nm. Journal of Physical Chemistry A. 122:8344-8353., Number 42 AbstractWebsite

Iodine monochloride (ICl) elimination from one-photon dissociation of CH2ICl at 248 nm is monitored by cavity ring-down absorption spectroscopy (CRDS). The spectrum of ICl is acquired in the transition of B3 0X1 + and is confirmed to result from a primary photodissociation, that is, CH2ICl + h→CH2 + ICl. The vibrational population ratio is determined with the aid of spectral simulation to be 1:(0.36 ± 0.10):(0.11 ± 0.05) for the vibrational levels = 0, 1, and 2 in the ground electronic state, corresponding to a Boltzmann-like vibrational temperature of 535 ± 69 K. The quantum yield of the ICl molecular channel for the reaction is obtained to be 0.052 ± 0.026 using a relative method in which the scheme CH2Br2 →CH2 + Br2 is adopted as the reference reaction. The ICl product contributed by the secondary collisions is minimized such that its quantum yield obtained is not overestimated. With the aid of the CCSD(T)//B3LYP/MIDI! level of theory, the ICl elimination from CH2ICl is evaluated to follow three pathways via either (1) a three-center transition state or (2) two isomerization transition states. However, the three-center concerted mechanism is verified to be unfavorable. © 2018 American Chemical Society.

Chen, B-J, Tsai P-Y, Huang T-K, Xia Z-H, Lin K-C, Chiou C-J, Sun B-J, Chang AHH.  2015.  Characterization of molecular channel in photodissociation of SOCl2 at 248 nm: Cl2 probing by cavity ring-down absorption spectroscopy. Physical Chemistry Chemical Physics. 17:7838-7847., Number 12 AbstractWebsite

A primary elimination channel of the chlorine molecule in the one-photon dissociation of SOCl2 at 248 nm was investigated using cavity ring-down absorption spectroscopy (CRDS). By means of spectral simulation, the ratio of the vibrational population in the v = 0, 1, and 2 levels was evaluated to be 1:(0.10 ± 0.02):(0.009 ± 0.005), corresponding to a Boltzmann vibrational temperature of 340 ± 30 K. The Cl2 molecular channel was obtained with a quantum yield of 0.4 ± 0.2 from the X1A′ ground state of SOCl2via internal conversion. The dissociation mechanism differs from a prior study where a smaller yield of <3% was obtained, initiated from the 21A′ excited state. Temperature-dependence measurements of the Cl2 fragment turn out to support our mechanism. With the aid of ab initio potential energy calculations, two dissociation routes to the molecular products were found, including one synchronous dissociation pathway via a three-center transition state (TS) and the other sequential dissociation pathway via a roaming-mediated isomerization TS. The latter mechanism with a lower energy barrier dominates the dissociation reaction. This journal is © the Owner Societies.

Dhenadhayalan, N, Lin K-C.  2015.  Chemically Induced Fluorescence Switching of Carbon-Dots and Its Multiple Logic Gate Implementation. Scientific Reports. 5 AbstractWebsite

Investigations were carried out on the carbon-dots (C-dots) based fluorescent off - on (Fe 3 €‰+ €‰ - S 2 O 3 2 ') and on - off (Zn 2 €‰+ €‰ - PO 4 3 ') sensors for the detection of metal ions and anions. The sensor system exhibits excellent selectivity and sensitivity towards the detection of biologically important Fe 3 €‰+ €‰, Zn 2 €‰+ €‰ metal ions and S 2 O 3 2 ', PO 4 3 ' anions. It was found that the functional group on the C-dots surface plays crucial role in metal ions and anions detection. Inspired by the sensing results, we demonstrate C-dots based molecular logic gates operation using metal ions and anions as the chemical input. Herein, YES, NOT, OR, XOR and IMPLICATION (IMP) logic gates were constructed based on the selection of metal ions and anions as inputs. This carbon-dots sensor can be utilized as various logic gates at the molecular level and it will show better applicability for the next generation of molecular logic gates. Their promising properties of C-dots may open up a new paradigm for establishing the chemical logic gates via fluorescent chemosensors.

Huang, T-K, Chen B-J, Lin K-C, Lin L, Sun B-J, Chang AHH.  2017.  Cl2 Elimination in 248 nm Photolysis of (COCl)2 Probed with Cavity Ring-Down Absorption Spectroscopy. Journal of Physical Chemistry A. 121:2888-2895., Number 15 AbstractWebsite

Cavity ring-down absorption spectroscopy (CRDS) is employed to investigate one-photon dissociation of (COCl)2 at 248 nm obtaining a primary Cl2 elimination channel. A ratio of vibrational population is estimated to be 1:(0.12 ± 0.03):(0.011 ± 0.003) for the v = 0, 1, and 2 levels. The quantum yield of Cl2 molecular channel is obtained to be 0.8 ± 0.4 initiated from the X̃ 1Ag ground state surface (COCl)2 via internal conversion. The obtained total quantum yield is attributed to both primary ((COCl)2 + hν → 2CO + Cl2) and secondary reactions (dominated by Cl + COCl → Cl2 + CO). The former is estimated to share a yield of >0.14, while the latter contributes up to 0.66. The photodissociation pathway to the molecular products is calculated to proceed via a four-center transition state (TS) from which Cl2 is eliminated synchronously. Installation of the mirrors with reflectivity of 99.995% in the CRDS apparatus prolongs the ring-down time to 70 μs, thus allowing for the contribution from 17% up to 66% of the total Cl2 yield from secondary reaction depending on the reaction temperature. Despite uncertainty in determining the product yield, the primary Cl2 dissociation channel eliminated from (COCl)2 is observed for the first time. © 2017 American Chemical Society.

Li, H-K, Tsai P-Y, Hung K-C, Kasai T, Lin K-C.  2015.  Communication: Photodissociation of CH3CHO at 308 nm: Observation of H-roaming, CH3-roaming, and transition state pathways together along the ground state surface. Journal of Chemical Physics. 142, Number 4 AbstractWebsite

Following photodissociation of acetaldehyde (CH3CHO) at 308 nm, the CO(v = 1-4) fragment is acquired using time-resolved Fourier-transform infrared emission spectroscopy. The CO(v = 1) rotational distribution shows a bimodal feature; the low- and high-J components result from H-roaming around CH3CO core and CH3-roaming around CHO radical, respectively, in consistency with a recent assignment by Kable and co-workers (Lee et al., Chem. Sci. 5, 4633 (2014)). The H-roaming pathway disappears at the CO(v 2) states, because of insufficient available energy following bond-breaking of H + CH3CO. By analyzing the CH4 emission spectrum, we obtained a bimodal vibrational distribution; the low-energy component is ascribed to the transition state (TS) pathway, consistent with prediction by quasiclassical trajectory calculations, while the high-energy component results from H- and CH3-roamings. A branching fraction of H-roaming/CH3-roaming/TS contribution is evaluated to be (8% ± 3%)/(68% ± 10%)/(25% ± 5%), in which the TS pathway was observed for the first time. The three pathways proceed concomitantly along the electronic ground state surface. © 2015 AIP Publishing LLC.

Hsu, M-Y, Tsai P-Y, Wei Z-R, Chao M-H, Zhang B, Kasai T, Lin K-C.  2013.  Competitive bond rupture in the photodissociation of bromoacetyl chloride and 2- and 3-bromopropionyl chloride: Adiabatic versus diabatic dissociation. ChemPhysChem. 14:936-945., Number 5 AbstractWebsite

Competitive bond dissociation mechanisms for bromoacetyl chloride and 2- and 3-bromopropionyl chloride following the 1[n(O) →π*(Cï£O)] transition at 234-235 nm are investigated. Branching ratios for C-Br/C-Cl bond fission are found by using the (2+1) resonance-enhanced multiphoton ionization (REMPI) technique coupled with velocity ion imaging. The fragment branching ratios depend mainly on the dissociation pathways and the distances between the orbitals of Br and the Cï£O chromophore. C-Cl bond fission is anticipated to follow an adiabatic potential surface for a strong diabatic coupling between the n(O)π*(Cï£O) and np(Cl)σ*(C-Cl) bands. In contrast, C-Br bond fission is subject to much weaker coupling between n(O)π*(Cï£O) and np(Br)σ*(C-Br). Thus, a diabatic pathway is preferred for bromoacetyl chloride and 2-bromopropionyl chloride, which leads to excited-state products. For 3-bromopropionyl chloride, the available energy is not high enough to reach the excited-state products such that C-Br bond fission must proceed through an adiabatic pathway with severe suppression by nonadiabatic coupling. The fragment translational energies and anisotropy parameters for the three molecules are also analyzed and appropriately interpreted. Busted open: Insight into the mechanisms causing C-Cl and C-Br bond fission of bromoacetyl chloride and 2- and 3-bromopropionyl chloride by following the 1[n(O) →π*(Cï£O)] transition is obtained. The figure shows the center-of-mass translational energy distributions of ground-state Br formation through a diabatic pathway for the dissociation of 2-bromopropionyl chloride. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Veerakumar, P., DLNK-C.  2020.  Computational and experimental analysis of carbon functional nanomaterials. Abstract

Density functional theory (DFT) as one of molecular simulation techniques has been widely used to become rapidly a powerful tool for research and technology development for the past three decades. In particular, the DFT-based theoretical and fundamental knowledge have shed light on our understanding of the fundamental surface science, catalysis, sensors, materials science, and biology. Oxygen, nitrogen, boron, phosphorus, and sulfur are the most common heteroatoms introduced on the functional carbon nanomaterials surface with different surface functionalities. This book chapter aims to provide a pedagogical narrative of the DFT and relevant computational methods applied for surface chemistry, homogeneous/heterogeneous catalysis, and the fluorescence-based sensing properties of carbon nanomaterials. We overview several representative case studies associated with energy and chemicals production and discuss relevant principles of computationally driven carbon nanomaterials design.

Veerakumar, P, Thanasekaran P, Lu K-L, Lin K-C, Rajagopal S.  2017.  Computational Studies of Versatile Heterogeneous Palladium-Catalyzed Suzuki, Heck, and Sonogashira Coupling Reactions. ACS Sustainable Chemistry and Engineering. 5:8475-8490., Number 10 AbstractWebsite

This perspective focuses on the mechanistic insights and complexity, which are difficult to acquire from pure experimental techniques, of the computational studies of Pd-catalyzed Suzuki, Heck, and Sonogashira carbon-carbon bond-forming reactions. These reactions consist of three fundamental steps including oxidative addition (OA), transmetalation (TM), and reductive elimination (RE) for the generation of carbon-carbon bonds from the bond-forming reactions of aryl halides (R1X) and organometallic species (R2M). Computational studies of these coupling reactions allow us to understand specific reaction pathways in the analysis of OA (resolving the linkage between coordination number and selectivity in Suzuki reaction), TM (the function of the base in the Suzuki reaction and various mechanistic options in the Sonogashira reaction), and RE (way of efficient β-hydride elimination in the Heck reaction). In addition, the reaction pathways and complexities in the full catalytic cycle of each reaction along with the future perspective are also discussed. © 2017 American Chemical Society.

Kasai, T, Lin K-C.  2017.  Coordinate Analysis for Interpreting the Decoherence in the Coherent NO with Ar Collision: A Physico-mathematical Picture Using the Stereographic Projection and the Cusp Catastrophe. Journal of the Chinese Chemical Society. 64:25-35., Number 1 AbstractWebsite

We present here a physico-mathematical picture for explaining the unexpectedly large decoherence cross-section (almost 10 times larger than its gas-kinematic cross-section) recently observed by Ureña and coworkers in their scattering experiment involving a coherent NO beam with Ar gas. The present topological picture consists of a stereographic projection and the cusp catastrophe theory of Thom, and we find that this model enables us to clarify the origin of the collisional decoherence. From the view of the stereographic projection, we can naturally introduce the wave property originating from the singular point at the “North pole” on the circumference S1 coordinate corresponding to a critical point for the collisional decoherence (condition 1). This picture also predicts the sudden changes of wave-phase collapse due to network interaction in the many-body system (condition 2). Thus it is hoped that the model proposed by Ureña et al. based on the dipole-induced dipole interaction in the NO + Ar system could be modified through this picture by including interactions with many Ar atoms in the environment. One way to fill the gap between the single-pair interaction picture and the multiple interaction one would be to employ theoretical calculations by use of the density matrix theory with and without adding the second Ar atom to the NO–Ar system. The cusp catastrophe theory reinforces the necessity of some cooperative network interaction between the coherent NO molecule and many neighboring Ar atoms and provides a qualitative scenario in which the whole system leads to a sudden change of the collisional decoherence of NO as a function of the control parameters (a, b). At this stage, the present physico-mathematical picture cannot give any specific values of the decoherence distance by the theory itself, but it clearly provides us a new topological concept for clarifying the origin of collisional decoherence which is strongly connected with the complexity of the system. Thus it gives us a global guide map toward further clarification of the collisional decoherence phenomenon with the aid of more sophisticated quantum mechanical calculations in the future. © 2016 The Chemical Society Located in Taipei & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim

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Chao, M-S, Tornero J, Lin KC, Stolte S, González Ureña A.  2013.  Decoherence cross-section in NO + Ar collisions: Experimental results and a simple model. Journal of Physical Chemistry A. 117:8119-8125., Number 34 AbstractWebsite

Quantum decoherence can be viewed as the mechanism responsible for the quantum-to-classical transition as the initially prepared quantum state interacts with its environment in an irreversible manner. One of the most common mechanisms responsible for the macroscopically observed decoherence involves collisions of an atom or molecule, initially prepared in a coherent superposition of states, with gas particles. In this work, a coherent superposition of quantum internal states of NO molecules is prepared by the interaction between the molecule with both a static and a radiofrequency electric field. Subsequently, NO + Ar collision decoherence experiments are investigated by measuring the loss of coherence as a function of the number of collisions. Data analysis using a model based on the interaction potential of the collisional partners allowed to unravel the molecular mechanism responsible for the loss of coherence in the prepared NO quantum superposition of internal states. The relevance of the present work relies on several aspects. On the one hand, the use of radio-waves introduces a new way for the production of coherent beams. On the other hand, the employed methodology could be useful in investigating the Stereodynamics of chemical reactions with coherent reagents. © 2013 American Chemical Society.

Kasai, T, Che D-C, Okada M, Tsai P-Y, Lin K-C, Palazzetti F, Aquilanti V.  2014.  Directions of chemical change: Experimental characterization of the stereodynamics of photodissociation and reactive processes. Physical Chemistry Chemical Physics. 16:9776-9790., Number 21 AbstractWebsite

This perspective article aims at accounting for the versatility of some current experimental investigations for exploring novel paths in chemical reactions. It updates a previous one [Phys. Chem. Chem. Phys., 2005, 5, 291] and is limited to work by the authors. The use of advanced molecular beam techniques together with a combination of modern tools for specific preparation, selection and detection permits us to discover new trends in reactivity in the gas phase as well as at interfaces. We specifically discuss new facets of stereodynamics, namely the effects of molecular orientation and alignment on reactive and photodissociation processes. Further topics involve roaming paths and triple fragmentation in photodissociation probed by imaging techniques, chirality effects in collisions and deviations from Arrhenius behavior in the temperature dependence of chemical reactions. © the Partner Organisations 2014.

Yao, Y-J, Lin K-C.  2014.  DNA interaction probed by evanescent wave cavity ring-down absorption spectroscopy via functionalized gold nanoparticles. Analytica Chimica Acta. 820:1-8. AbstractWebsite

Evanescent wave cavity ring-down absorption spectroscopy (EW-CRDS) is employed to study interaction and binding kinetics of DNA strands by using gold nanoparticles (Au NPs) as sensitive reporters. These Au NPs are connected to target DNA of study that hybridizes with the complementary DNA fixed on the silica surface. By the absorbance of Au NPs, the interaction between two DNA strands may be examined to yield an adsorption equilibrium constant of 2.2×1010M-1 using Langmuir fit. The binding efficiency that is affected by ion concentration, buffer pH and temperature is also examined. This approach is then applied to the label-free detection of the DNA mutation diseases using the sandwich hybridization assay. For monitoring a gene associated with sickle-cell anemia, the detection limit and the adsorption equilibrium constant is determined to be 1.2pM and (3.7±0.8)×1010M-1, distinct difference from the perfectly matched DNA sequence that yields the corresponding 0.5pM and (1.1±0.2)×1011M-1. The EW-CRDS method appears to have great potential for the investigation of the kinetics of a wide range of biological reactions. © 2014 Elsevier B.V.

Tsai, P-Y, Lin K-C.  2011.  Doublet rotational energy transfer of the SH (X 2Π, v′′ = 0) state by collisions with Ar. Physical Chemistry Chemical Physics. 13:8857-8868., Number 19 AbstractWebsite

The rotational energy transfer (RET) by Ar collisions within the SH X 2Π (v′′ = 0, J′′ = 0.5-10.5) state is characterized. The integral cross sections as a function of collision energy for each rotational transition are calculated using a quantum scattering method in which the constructed potential energy functions are based on a ground state potential energy surface (PES) reported previously. On the other hand, a laser-induced excitation fluorescence technique is employed to monitor the relaxation of the rotational population as a function of photolysis-probe delay time following the photodissociation of H2S at 248 nm. The rotational population evolution is comparable to its theoretical counterpart based on calculated Λ-resolved RET rate constants. The propensity in Λ-resolved RET transitions is found to approximately resemble the case of OH(X 2Π, v′′ = 0) + Ar. The Λ-averaged RET collisions are also analyzed and result in several propensity rules in the transitions. Most propensity rules are similar to those observed in the collisions of SH(A 2Σ+) by Ar. However, the behavior of the conserving ratio, defined as rate constants for spin-orbit conserving transition divided by those for spin-orbit changing transition, shows distinct difference from those described by Hund’s case (b). © the Owner Societies.