Publications in the Year: 2015

Conference Paper

Lin, K-C, Tsai P-Y, Chao M-H, Kasai T, Lombardi A, Palazzetti F, Aquilanti V.  2015.  Photodissociation of methyl formate: Conical intersections, roaming and triple fragmentation. AIP Conference Proceedings. 1702 Abstract

The photodissociation channels of methyl formate have been extensively investigated by two different advanced experimental techniques, ion imaging and Fourier-Transform-Infrared emission spectroscopy, combined with quantum chemical calculations and molecular dynamics simulations. Our aim is to characterize the role of alternative routes to the conventional transition-state mediated pathway: the roaming and the triple fragmentation processes. The photolysis experiments, carried out at a range of laser wavelengths in the vicinity of the triple fragmentation threshold, beside the simulation of large bunches of classical trajectories with different initial conditions, have shown that both mechanisms share a common path that involves a conical intersection during the relaxation process from the electronic excited state S1 to the ground state S0. © 2015 AIP Publishing LLC.

Kasai, T, Che D-C, Tsai P-Y, Lin K-C, Palazzetti F, Aquilanti V.  2015.  Stereodynamics: From elementary processes to macroscopic chemical reactions. AIP Conference Proceedings. 1702 Abstract

This paper aims at discussing new facets on stereodynamical behaviors in chemical reactions, i.e. the effects of molecular orientation and alignment on reactive processes. Further topics on macroscopic processes involving deviations from Arrhenius behavior in the temperature dependence of chemical reactions and chirality effects in collisions are also discussed. © 2015 AIP Publishing LLC.

Journal Article

Dhenadhayalan, N, Lin K-C.  2015.  Chemically Induced Fluorescence Switching of Carbon-Dots and Its Multiple Logic Gate Implementation. Scientific Reports. 5 AbstractWebsite

Investigations were carried out on the carbon-dots (C-dots) based fluorescent off - on (Fe 3 €‰+ €‰ - S 2 O 3 2 ') and on - off (Zn 2 €‰+ €‰ - PO 4 3 ') sensors for the detection of metal ions and anions. The sensor system exhibits excellent selectivity and sensitivity towards the detection of biologically important Fe 3 €‰+ €‰, Zn 2 €‰+ €‰ metal ions and S 2 O 3 2 ', PO 4 3 ' anions. It was found that the functional group on the C-dots surface plays crucial role in metal ions and anions detection. Inspired by the sensing results, we demonstrate C-dots based molecular logic gates operation using metal ions and anions as the chemical input. Herein, YES, NOT, OR, XOR and IMPLICATION (IMP) logic gates were constructed based on the selection of metal ions and anions as inputs. This carbon-dots sensor can be utilized as various logic gates at the molecular level and it will show better applicability for the next generation of molecular logic gates. Their promising properties of C-dots may open up a new paradigm for establishing the chemical logic gates via fluorescent chemosensors.

Veerakumar, P, Dhenadhayalan N, Lin K-C, Liu S-B.  2015.  Highly stable ruthenium nanoparticles on 3D mesoporous carbon: An excellent opportunity for reduction reactions. Journal of Materials Chemistry A. 3:23448-23457., Number 46 AbstractWebsite

Carbon mesoporous materials (CPMs) have great potential in the field of heterogeneous catalysis. Highly dispersed ruthenium nanoparticles (RuNPs) embedded in three dimensional (3D) CPMs as catalysts with a high surface area (1474 m2 g-1) were prepared by microwave-thermal reduction processes. Characterization technologies including X-ray diffraction (XRD), N2 adsorption/desorption isotherm measurements, field emission transmission electron microscopy (FE-TEM), thermogravimetric analysis (TGA), hydrogen temperature-programmed reduction (H2-TPR), Raman spectroscopy and 13C solid state cross polarization and magic angle spinning (13C CP/MAS) NMR spectroscopy were utilized to scrutinize the catalysts. It was revealed that the Ru/CPM catalysts exhibited a highly ordered 3D mesoporous structure and a large surface area and were widely used as catalysts for reduction reactions. Reduction of p-nitroaniline (p-NA) and crystal violet (CV) using NaBH4 with the use of this catalyst was studied by means of UV-vis spectroscopy. Here, NaBH4 acts as a hydrogen donor. This catalyst shows an excellent catalytic activity towards reduction of p-NA and CV dye at room temperature. Due to the promising properties of CPMs, they can be utilized to fabricate 3D carbon-based materials for a variety of novel applications. © The Royal Society of Chemistry 2015.

Tsai, P-Y, Li H-K, Kasai T, Lin K-C.  2015.  Roaming as the dominant mechanism for molecular products in the photodissociation of large aliphatic aldehydes. Physical Chemistry Chemical Physics. 17:23112-23120., Number 35 AbstractWebsite

Photodissociation of isobutyraldehyde (C3H7CHO) at 248 nm is investigated using time-resolved Fourier-transform infrared emission spectroscopy to demonstrate the growing importance of the roaming pathway with increasing molecular size of aliphatic aldehydes. Each acquired CO rotational distribution from v = 1 to 4 is well characterized by a single Boltzmann rotational temperature from 637 to 750 K, corresponding to an average rotational energy of 5.9 ± 0.6 kJ mol-1. The roaming signature that shows a small fraction of CO rotational energy disposal accompanied by a vibrationally hot C3H8 co-fragment is supported by theoretical prediction. The energy difference between the tight transition state (TS) and the roaming saddle point (SP) is found to be -27, 4, 15, 22, and 30 kJ mol-1 for formaldehyde, acetaldehyde, propionaldehyde, isobutyraldehyde, and 2,2-dimethyl propanal, respectively. The roaming SP is stabilized by a larger alkyl moiety. It is suggested that the roaming photodissociation rate of aldehydes increasingly exceeds those via the tight TS, resulting in the dominance of the CO + alkane products, as the size of aldehydes becomes larger. Along with formaldehyde, acetaldehyde, and propionaldehyde, in this work isobutyraldehyde is further demonstrated that this aldehyde family with special functional group is the first case in the organic compound to follow predominantly a roaming dissociation pathway, as the molecular size becomes larger. © the Owner Societies 2015.

Tsai, P-Y, Lin K-C.  2015.  Insight into the photodissociation dynamical feature of conventional transition state and roaming pathways by an impulsive model. Journal of Physical Chemistry A. 119:29-38., Number 1 AbstractWebsite

Without the need to construct complicated potential energy surfaces, a multicenter impulsive model is developed to characterize the dynamical feature of conventional transition state (TS) and roaming pathways in the photodissociation of formaldehyde, H2CO → CO + H2. The photofragment energy distributions (PED) resulting from the roaming mechanism are found to closely correlate to a particular configuration that lies close to the edge of the plateau-like intrinsic reaction coordinate, whereas such a PED is associated with the configuration at the saddle point when the conventional TS pathway is followed. The evaluated PED results are consistent with those by experimental findings and quasi-classical trajectory calculations. Following impulsive analysis, the roaming pathway can be viewed as a consequence of energy transfer events between several vibrational modes. For H2CO, the available energy initially accumulated at the C-H bond is transferred to other transitional mode(s) via stretching-bending coupling, and finally to the HH stretching. (Chemical Presented). © 2014 American Chemical Society.

Tsai, P-Y, Lin K-C.  2015.  Insight into photofragment vector correlation by a multi-center impulsive model. Physical Chemistry Chemical Physics. 17:19592-19601., Number 29 AbstractWebsite

A multi-center impulsive model has been recently developed to characterize the dynamic feature of product energy distribution in photodissociation of formaldehyde, H2CO → CO + H2. (J. Phys. Chem. A, 2015, 119, 29) The model is extended to predict the vector correlations among transition dipole moment μ of the parent molecule, recoil velocity v and rotational angular momentum j of the fragments produced via the transition state (TS) and roaming path. The correlation results of μ-j, j-j and μ-v vectors of the fragments are consistent with those reported using quasi-classical trajectory simulation on the global potential energy surface. In contrast to the TS route, the vector properties via the roaming path are loosely correlated. This work offers an alternative method to study stereodynamics of the photodissociation process, and is conducive to clarifying the origin of photofragment vector correlation especially for the roaming pathway. This journal is © the Owner Societies.

Chen, B-J, Tsai P-Y, Huang T-K, Xia Z-H, Lin K-C, Chiou C-J, Sun B-J, Chang AHH.  2015.  Characterization of molecular channel in photodissociation of SOCl2 at 248 nm: Cl2 probing by cavity ring-down absorption spectroscopy. Physical Chemistry Chemical Physics. 17:7838-7847., Number 12 AbstractWebsite

A primary elimination channel of the chlorine molecule in the one-photon dissociation of SOCl2 at 248 nm was investigated using cavity ring-down absorption spectroscopy (CRDS). By means of spectral simulation, the ratio of the vibrational population in the v = 0, 1, and 2 levels was evaluated to be 1:(0.10 ± 0.02):(0.009 ± 0.005), corresponding to a Boltzmann vibrational temperature of 340 ± 30 K. The Cl2 molecular channel was obtained with a quantum yield of 0.4 ± 0.2 from the X1A′ ground state of SOCl2via internal conversion. The dissociation mechanism differs from a prior study where a smaller yield of <3% was obtained, initiated from the 21A′ excited state. Temperature-dependence measurements of the Cl2 fragment turn out to support our mechanism. With the aid of ab initio potential energy calculations, two dissociation routes to the molecular products were found, including one synchronous dissociation pathway via a three-center transition state (TS) and the other sequential dissociation pathway via a roaming-mediated isomerization TS. The latter mechanism with a lower energy barrier dominates the dissociation reaction. This journal is © the Owner Societies.

Lee, H-L, Dhenadhayalan N, Lin K-C.  2015.  Metal ion induced fluorescence resonance energy transfer between crown ether functionalized quantum dots and rhodamine B: Selectivity of K+ ion. RSC Advances. 5:4926-4933., Number 7 AbstractWebsite

We report a ratiometric fluorescent metal ion sensor based on the mechanism of fluorescence resonance energy transfer (FRET) between synthesized 15-crown-5-ether capped CdSe/ZnS quantum dots (QDCE) and 15-crown-5-ether attached rhodamine B (RBCE) in pH 8.3 buffer solution. Fluorescence titration with different metal ions in pH 8.3 buffer solution of the QDCE-RBCE conjugate showed a decrease and an increase in the fluorescence intensity for QDCE and RBCE moieties respectively due to FRET from QDCE to RBCE. This sensor system shows excellent selectivity towards K+ ions resulting in increasing efficiency of FRET. Energy transfer efficiency depends on the affinity between metal ions and crown ether functionalized with QDCE/RBCE. The detailed analysis of FRET was explored. This water soluble ratiometric sensor system can act as a good FRET probe for sensing applications especially in biological systems. © The Royal Society of Chemistry 2015.

Nakamura, M, Tsai P-Y, Kasai T, Lin K-C, Palazzetti F, Lombardi A, Aquilanti V.  2015.  Dynamical, spectroscopic and computational imaging of bond breaking in photodissociation: Roaming and role of conical intersections. Faraday Discussions. 177:77-98. AbstractWebsite

Recent experimental and theoretical advances in the study of the dissociation of excited molecules are revealing unexpected mechanisms, when their outcomes are tackled by combining (i) space-time ion imaging of translational features, with (ii) spectroscopic probing of rotational and vibrational distributions; crucial is the assistance of (iii) the quantum chemistry of structural investigations of rearrangements of chemical bonds, and of (iv) the simulations of molecular dynamics to follow the evolution of selective bond stretching and breaking. Here we present results of such an integrated approach to methyl formate, HCOOCH3, the simplest of esters; the main focus is on the rotovibrationally excited CO (v = 1) product and in general on the energy distribution in the fragments. Previous laser studies of dissociation into CO and CH3OH at a sequence of various wavelengths discovered signatures of a roaming mechanism by the late arrival of CO (v = 0) products in time-of-flight ion imaging. Subsequent detailed investigations as a function of excitation energy provided the assessment of the threshold, which opens for triple breakdown into CO and further fragments H and CH3O, as spectroscopically characterized by ion imaging and FTIR respectively. Accompanying quantum mechanical electronic structure calculations and classical molecular dynamics simulations clarify the origin of these fragments through "roaming" pathways involving incipient radical intermediates at energies below the triple fragmentation threshold: a specific role is played by nonadiabatic transitions at a conical intersection between ground and excited states; alternative pathways focalize our attention to regions of the potential energy surfaces other than those in the neighbourhoods of saddle points along minimum energy paths: eventually this leads us to look for avenues in reaction kinetics beyond those of venerable transition state theories. This journal is © The Royal Society of Chemistry.

Li, H-K, Tsai P-Y, Hung K-C, Kasai T, Lin K-C.  2015.  Communication: Photodissociation of CH3CHO at 308 nm: Observation of H-roaming, CH3-roaming, and transition state pathways together along the ground state surface. Journal of Chemical Physics. 142, Number 4 AbstractWebsite

Following photodissociation of acetaldehyde (CH3CHO) at 308 nm, the CO(v = 1-4) fragment is acquired using time-resolved Fourier-transform infrared emission spectroscopy. The CO(v = 1) rotational distribution shows a bimodal feature; the low- and high-J components result from H-roaming around CH3CO core and CH3-roaming around CHO radical, respectively, in consistency with a recent assignment by Kable and co-workers (Lee et al., Chem. Sci. 5, 4633 (2014)). The H-roaming pathway disappears at the CO(v 2) states, because of insufficient available energy following bond-breaking of H + CH3CO. By analyzing the CH4 emission spectrum, we obtained a bimodal vibrational distribution; the low-energy component is ascribed to the transition state (TS) pathway, consistent with prediction by quasiclassical trajectory calculations, while the high-energy component results from H- and CH3-roamings. A branching fraction of H-roaming/CH3-roaming/TS contribution is evaluated to be (8% ± 3%)/(68% ± 10%)/(25% ± 5%), in which the TS pathway was observed for the first time. The three pathways proceed concomitantly along the electronic ground state surface. © 2015 AIP Publishing LLC.