Publications in the Year: 2014

Conference Paper

Lin, K-C.  2014.  Evanescent wave cavity ring-down spectroscopy in application to chemical and biological sensing. Laser Science, LS 2014. Abstract

Evanescent wave cavity ring-down absorption spectroscopy is applied to investigate thermodynamics, kinetics, orientation of the substrates on the surface, probe critical hemimicelle concentration of surfactants, and examine interaction and binding kinetics of DNA strands. © 2014 OSA.

Journal Article

Yao, Y-J, Lin K-C.  2014.  DNA interaction probed by evanescent wave cavity ring-down absorption spectroscopy via functionalized gold nanoparticles. Analytica Chimica Acta. 820:1-8. AbstractWebsite

Evanescent wave cavity ring-down absorption spectroscopy (EW-CRDS) is employed to study interaction and binding kinetics of DNA strands by using gold nanoparticles (Au NPs) as sensitive reporters. These Au NPs are connected to target DNA of study that hybridizes with the complementary DNA fixed on the silica surface. By the absorbance of Au NPs, the interaction between two DNA strands may be examined to yield an adsorption equilibrium constant of 2.2×1010M-1 using Langmuir fit. The binding efficiency that is affected by ion concentration, buffer pH and temperature is also examined. This approach is then applied to the label-free detection of the DNA mutation diseases using the sandwich hybridization assay. For monitoring a gene associated with sickle-cell anemia, the detection limit and the adsorption equilibrium constant is determined to be 1.2pM and (3.7±0.8)×1010M-1, distinct difference from the perfectly matched DNA sequence that yields the corresponding 0.5pM and (1.1±0.2)×1011M-1. The EW-CRDS method appears to have great potential for the investigation of the kinetics of a wide range of biological reactions. © 2014 Elsevier B.V.
Lin, K-C, Tsai P-Y.  2014.  Molecular halogen elimination from halogen-containing compounds in the atmosphere. Physical Chemistry Chemical Physics. 16:7184-7198., Number 16 AbstractWebsite

Atmospheric halogen chemistry has drawn much attention, because the halogen atom (X) playing a catalytic role may cause severe stratospheric ozone depletion. Atomic X elimination from X-containing hydrocarbons is recognized as the major primary dissociation process upon UV-light irradiation, whereas direct elimination of the X2 product has been seldom discussed or remained a controversial issue. This account is intended to review the detection of X2 primary products using cavity ring-down absorption spectroscopy in the photolysis at 248 nm of a variety of X-containing compounds, focusing on bromomethanes (CH2Br2, CF2Br2, CHBr2Cl, and CHBr3), dibromoethanes (1,1-C 2H4Br2 and 1,2-C2H 4Br2) and dibromoethylenes (1,1-C2H 2Br2 and 1,2-C2H2Br2), diiodomethane (CH2I2), thionyl chloride (SOCl 2), and sulfuryl chloride (SO2Cl2), along with a brief discussion on acyl bromides (BrCOCOBr and CH2BrCOBr). The optical spectra, quantum yields, and vibrational population distributions of the X2 fragments have been characterized, especially for Br2 and I2. With the aid of ab initio calculations of potential energies and rate constants, the detailed photodissociation mechanisms may be comprehended. Such studies are fundamentally important to gain insight into the dissociation dynamics and may also practically help to assess the halogen-related environmental variation. This journal is © the Partner Organisations 2014.
Lin, K-C, Hung K-C, Tsai P-Y, Li H-K.  2014.  Photodissociation of CH3CHO at 248 nm by time-resolved Fourier-transform infrared emission spectroscopy: Verification of roaming and triple fragmentation. Journal of Chemical Physics. 140, Number 6 AbstractWebsite

By using time-resolved Fourier-transform infrared emission spectroscopy, the HCO fragment dissociated from acetaldehyde (CH3CHO) at 248 nm is found to partially decompose to H and CO. The fragment yields are enhanced by the Ar addition that facilitates the collision-induced internal conversion. The channels to CH2CO + H2 and CH3CO + H are not detected significantly. The rotational population distribution of CO, after removing the Ar collision effect, shows a bimodal feature comprising both low- and high-rotational (J) components, sharing a fraction of 19% and 81%, respectively, for the vibrational state v = 1. The low-J component is ascribed to both roaming pathway and triple fragmentation. They are determined to have a branching ratio of <0.13 and >0.06, respectively, relative to the whole v = 1 population. The CO roaming is accompanied by a highly vibrational population of CH4 that yields a vibrational bimodality. © 2014 AIP Publishing LLC.
Tsai, P-Y, Hung K-C, Li H-K, Lin K-C.  2014.  Photodissociation of propionaldehyde at 248 nm: Roaming pathway as an increasingly important role in large aliphatic aldehydes. Journal of Physical Chemistry Letters. 5:190-195., Number 1 AbstractWebsite

Time-resolved Fourier transform infrared emission spectroscopy is employed in the photolysis of propionaldehyde (CH3CH2CHO) at 248 nm to characterize the role of the roaming pathway. High-resolution spectra of CO are analyzed to yield a single Boltzmann rotational distribution for each vibrational level (ν = 1-4) with small rotational and large vibrational energy disposals. A roaming saddle point is found containing two far separated moieties of HCO and CH3CH2 with a weak interaction between them. Quasiclassical trajectory calculations on this configuration yield the CO energy flow behavior, consistent with the findings. The rate constant along the roaming pathway is evaluated to be larger by >1-2 orders of magnitude than those along tight transition state or three-body dissociation pathways. This work implies that the roaming mechanism plays an increasingly important role in aliphatic aldehydes as the molecular size becomes larger. © 2013 American Chemical Society.
Tsai, P-Y, Chao M-H, Kasai T, Lin K-C, Lombardi A, Palazzetti F, Aquilanti V.  2014.  Roads leading to roam. Role of triple fragmentation and of conical intersections in photochemical reactions: Experiments and theory on methyl formate. Physical Chemistry Chemical Physics. 16:2854-2865., Number 7 AbstractWebsite

The exploration of alternative roads that open to molecules with sufficient energy to yield different products permits prediction and eventually control of the outcomes of chemical reactions. Advanced imaging techniques for monitoring laser-induced photodissociation are here combined with dynamical simulations, involving ample sets of classical trajectories generated on a quantum chemical potential energy surface. Methyl formate, HCOOCH3, is photodissociated at energies near the triple fragmentation threshold into H, CO and OCH3. Images of velocity and rotational distributions of CO exhibit signatures of alternative routes, such as those recently designated as transition-state vs. roaming-mediated. Furthermore, a demonstration of the triple fragmentation route is given, and also confirmed by H-atom product imaging and FTIR time-resolved spectra of the intermediate HCO radical. In addition, the relevance of nonadiabatic transitions promoted by a conical intersection is clarified by simulations as the privileged "reactivity funnel" of organic photochemistry, whereby the outcomes of molecular photoexcitation are delivered to electronic ground states. This journal is © the Owner Societies 2014.
Kasai, T, Che D-C, Okada M, Tsai P-Y, Lin K-C, Palazzetti F, Aquilanti V.  2014.  Directions of chemical change: Experimental characterization of the stereodynamics of photodissociation and reactive processes. Physical Chemistry Chemical Physics. 16:9776-9790., Number 21 AbstractWebsite

This perspective article aims at accounting for the versatility of some current experimental investigations for exploring novel paths in chemical reactions. It updates a previous one [Phys. Chem. Chem. Phys., 2005, 5, 291] and is limited to work by the authors. The use of advanced molecular beam techniques together with a combination of modern tools for specific preparation, selection and detection permits us to discover new trends in reactivity in the gas phase as well as at interfaces. We specifically discuss new facets of stereodynamics, namely the effects of molecular orientation and alignment on reactive and photodissociation processes. Further topics involve roaming paths and triple fragmentation in photodissociation probed by imaging techniques, chirality effects in collisions and deviations from Arrhenius behavior in the temperature dependence of chemical reactions. © the Partner Organisations 2014.