Publications in the Year: 2017

Conference Paper

Lin, K-C, Nakamura M, Yang, S. J, Kasai T, Che D-C, Lombardi A, Palazzetti F, Aquilanti V.  2017.  Angular distribution of bromine atomic photofragment in oriented 2-bromobutane via hexapole state selector. AIP Conference Proceedings. 1906 Abstract

In this work, an asymmetric top molecule 2-bromobutane has been successfully oriented by using hexapole state selector combined with orientation field, followed by detection of the bromine atomic photofragment distribution in the photolysis. The photofragment is produced in both the ground Br (2P3/2) and the excited Br (2P1/2) electronic states and both channels are studied by the slice imaging technique, revealing new features in the stereodynamic vectorial properties with respect to previous investigations on non-oriented molecules. © 2017 Author(s).

Kasai, T, Muthiah B, Lin K-C.  2017.  Role of cooperative network interaction in transition region of roaming reactions: Non-equilibrium steady state vs. thermal equilibrium reaction scheme. AIP Conference Proceedings. 1906 Abstract

This paper proposes a new type of roaming mechanism. We find a signature of trajectory with chaotic behavior in the action-angle diagram of the H + H2 reaction on a LEP surface, namely the trajectory is found to be very sensitive to the initial angle variable which corresponds to the phase of the H2 vibration. The trajectory pattern switches from the direct to the complex forming mechanism, and vice versa, in the angle range (0 ∼ π). In the complex forming angle range, trajectories switch from reactive to non-reactive randomly and suddenly, as the result, we cannot predict the collision pattern from the initial conditions. Therefore, we may classify such trajectory as a new type of roaming with chaotic behavior, and it is different from the ordinary trajectory with deterministic behavior. This chaotic behavior could be due cooperative nearby network interaction (CNN effect). We also suggest that the KPP (Kolmogorow-Petrovsky-Piskounov) equation is useful to estimate the density gradient of the activated reagents, so that one can evaluate the branching ratio to various exit channels, such as triple fragmentation, tight transition state, or the roaming channel with the aid of the present classical trajectory calculation. © 2017 Author(s).

Journal Article

Chao, M-H, Lin Y-T, Dhenadhayalan N, Lee H-L, Lee H-Y, Lin K-C.  2017.  3D Probed Lipid Dynamics in Small Unilamellar Vesicles. Small. 13, Number 13 AbstractWebsite

Single-molecule fluorescence correlation spectroscopy overcomes the resolution barrier of optical microscopy (10≈–20 nm) and is utilized to look into lipid dynamics in small unilamellar vesicles (SUVs; diameter < 100 nm). The fluorescence trajectories of lipid-like tracer 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindodicarbocyanine (DiD) in the membrane bilayers are acquired at a single-molecule level. The autocorrelation analysis yields the kinetic information on lipid organization, oxygen transport, and lateral diffusion in SUVs' membrane. First, the isomerization feasibility may be restricted by the addition of cholesterols, which form structure conjugation with DiD chromophore. Second, the oxygen transport is prevented from the ultrasmall cluster and cholesterol-rich regions, whereas it can pass through the membrane region with liquid-disordered phase (Ld) and defects. Third, by analyzing 2D spectra correlating the lipid diffusion coefficient and triplet-state lifetime, the heterogeneity in lipid bilayer can be precisely visualized such as lipid domain with different phases, the defects of lipid packing, and DiD-induced “bouquet” ultrasmall clusters. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

Wu, PY, Huang HH, Lin KC, Tzeng WB.  2017.  Two-color resonant two-photon ionization and mass-analyzed threshold ionization spectroscopy of 4-chlorostyrene. Chemical Physics Letters. 682:34-37. AbstractWebsite

The first electronic excitation and adiabatic ionization energies of 35Cl and 37Cl 4-chlorostyrene were similar, with values of 33,977 ± 2 and 67,972 ± 5 cm−1, respectively. The general features in the obtained vibronic and cation spectra of the two isotopologues were similar. A frequency shift of 1–5 cm−1 was observed on many active vibrations of the 35Cl and 37Cl isotopologues of 4-chlorostyrene in the S1 and D0 states. This frequency difference at each mode may reflect the degree of Cl atom involvement in the overall vibration. © 2017 Elsevier B.V.

Nakamura, M, Yang, S. J, Lin K-C, Kasai T, Che D-C, Lombardi A, Palazzetti F, Aquilanti V.  2017.  Stereodirectional images of molecules oriented by a variable-voltage hexapolar field: Fragmentation channels of 2-bromobutane electronically excited at two photolysis wavelengths. Journal of Chemical Physics. 147, Number 1 AbstractWebsite

The asymmetric-top molecule 2-bromobutane is oriented by means of a hexapole state selector; the angular distribution of the bromine atom photofragment, for the two fine-structure components, is acquired by velocity-map ion imaging. The molecular beam, spatially oriented along the time-of-flight axis, is intersected with a linearly polarized laser, whose polarization is tilted by 45° with respect to the detector surface. To obtain the mixing ratio of the perpendicular and parallel transitions, the fragment ion images and angular distributions can be appropriately simulated to give insight on the population mechanism of the specific electronic state involved at each selected excitation wavelength. The photofragment images obtained at 238.6 nm yielded an asymmetry factor β1 of 0.67, indicative of the extent of molecular orientation, and an anisotropy parameter β2 of 1.03, which is a signature of a prevailing parallel transition along the C-Br axis. When the photolysis wavelength is tuned to 254.1 nm, the corresponding angular distribution is less asymmetric (β1 = 0.24) and the obtained small value β2 = 0.12 is a characteristic of a predominantly perpendicular transition. The photofragment angular distributions are also affected by hexapole voltage, especially regarding the asymmetry factor, and this aspect provides information on the effect of molecular orientation. © 2017 Author(s).

Veerakumar, P, Dhenadhayalan N, Lin K-C, Liu S-B.  2017.  Silver Nanoparticles Modified Graphitic Carbon Nitride Nanosheets as a Significant Bifunctional Material for Practical Applications. ChemistrySelect. 2:1398-1408., Number 4 AbstractWebsite

Amine-functionalized graphitic carbon nitride (NH2/GCN) nanosheets photoluminescence, catalytic properties and excellent water dispersion stability were prepared and characterized by a variety of different analytical and spectroscopic techniques. The well-dispersed NH2/GCN nanosheets were found to exhibit remarkable pH sensing sensitivity at an ambient temperature with desirable broad detection range (1 ≤ pH ≤ 12). Moreover, upon incorporating silver nanoparticles (Ag NPs), the Ag-NH2/GCN nanocomposites showed excellent performances for catalytic reduction of 4-nitrophenol (4-NP) in NaBH4 with a superior rate constant (k) of 0.1594 s-1 within as short as 30 s. The NH2/GCN and Ag-NH2/GCN nanocomposites reported herein therefore render prospective applications as sensitive pH and practical catalytic applications. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim

Dhenadhayalan, N, Yadav K, Sriram MI, Lee H-L, Lin K-C.  2017.  Ultra-sensitive DNA sensing of a prostate-specific antigen based on 2D nanosheets in live cells. Nanoscale. 9:12087-12095., Number 33 AbstractWebsite

Herein, we report ultra-sensitive sensing of a prostate-specific antigen (PSA), which is used as a biomarker to detect prostate cancer, using a molybdenum series (MoO3, MoS2, and MoSe2) of two-dimensional nanosheets (2D NSs). Moreover, the design of a 2D NS-based PSA aptamer sensor system was demonstrated based on a fluorescence turn-on mechanism in the presence of a target. The 2D NSs acted as an excellent sensing platform in which the PSA aptamer was adsorbed on the NSs and subsequent energy transfer between them led to fluorescence quenching of the aptamer. The detection limit of PSA was achieved to be 13 pM for MoO3 NSs, whereas the MoS2 and MoSe2 systems exhibited a detection limit of 72 and 157 pM, respectively. To the best of our knowledge, this is the first report on the ultra-sensitive detection of a 2D NS-based aptamer sensor. The in vitro bioimaging measurements were performed using confocal fluorescence microscopy. Herein, PSA detection was successfully demonstrated in human embryonic kidney 293T (HEK) live cells. Moreover, the MoO3, MoS2, and MoSe2 NSs exhibit excellent biocompatibility and low toxicity; thus, these 2D NSs can be used as a promising sensor platform to detect prostate cancer. This journal is © The Royal Society of Chemistry.

Kasai, T, Lin K-C.  2017.  Coordinate Analysis for Interpreting the Decoherence in the Coherent NO with Ar Collision: A Physico-mathematical Picture Using the Stereographic Projection and the Cusp Catastrophe. Journal of the Chinese Chemical Society. 64:25-35., Number 1 AbstractWebsite

We present here a physico-mathematical picture for explaining the unexpectedly large decoherence cross-section (almost 10 times larger than its gas-kinematic cross-section) recently observed by Ureña and coworkers in their scattering experiment involving a coherent NO beam with Ar gas. The present topological picture consists of a stereographic projection and the cusp catastrophe theory of Thom, and we find that this model enables us to clarify the origin of the collisional decoherence. From the view of the stereographic projection, we can naturally introduce the wave property originating from the singular point at the “North pole” on the circumference S1 coordinate corresponding to a critical point for the collisional decoherence (condition 1). This picture also predicts the sudden changes of wave-phase collapse due to network interaction in the many-body system (condition 2). Thus it is hoped that the model proposed by Ureña et al. based on the dipole-induced dipole interaction in the NO + Ar system could be modified through this picture by including interactions with many Ar atoms in the environment. One way to fill the gap between the single-pair interaction picture and the multiple interaction one would be to employ theoretical calculations by use of the density matrix theory with and without adding the second Ar atom to the NO–Ar system. The cusp catastrophe theory reinforces the necessity of some cooperative network interaction between the coherent NO molecule and many neighboring Ar atoms and provides a qualitative scenario in which the whole system leads to a sudden change of the collisional decoherence of NO as a function of the control parameters (a, b). At this stage, the present physico-mathematical picture cannot give any specific values of the decoherence distance by the theory itself, but it clearly provides us a new topological concept for clarifying the origin of collisional decoherence which is strongly connected with the complexity of the system. Thus it gives us a global guide map toward further clarification of the collisional decoherence phenomenon with the aid of more sophisticated quantum mechanical calculations in the future. © 2016 The Chemical Society Located in Taipei & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim

Veerakumar, P, Thanasekaran P, Lu K-L, Lin K-C, Rajagopal S.  2017.  Computational Studies of Versatile Heterogeneous Palladium-Catalyzed Suzuki, Heck, and Sonogashira Coupling Reactions. ACS Sustainable Chemistry and Engineering. 5:8475-8490., Number 10 AbstractWebsite

This perspective focuses on the mechanistic insights and complexity, which are difficult to acquire from pure experimental techniques, of the computational studies of Pd-catalyzed Suzuki, Heck, and Sonogashira carbon-carbon bond-forming reactions. These reactions consist of three fundamental steps including oxidative addition (OA), transmetalation (TM), and reductive elimination (RE) for the generation of carbon-carbon bonds from the bond-forming reactions of aryl halides (R1X) and organometallic species (R2M). Computational studies of these coupling reactions allow us to understand specific reaction pathways in the analysis of OA (resolving the linkage between coordination number and selectivity in Suzuki reaction), TM (the function of the base in the Suzuki reaction and various mechanistic options in the Sonogashira reaction), and RE (way of efficient β-hydride elimination in the Heck reaction). In addition, the reaction pathways and complexities in the full catalytic cycle of each reaction along with the future perspective are also discussed. © 2017 American Chemical Society.

Huang, T-K, Chen B-J, Lin K-C, Lin L, Sun B-J, Chang AHH.  2017.  Cl2 Elimination in 248 nm Photolysis of (COCl)2 Probed with Cavity Ring-Down Absorption Spectroscopy. Journal of Physical Chemistry A. 121:2888-2895., Number 15 AbstractWebsite

Cavity ring-down absorption spectroscopy (CRDS) is employed to investigate one-photon dissociation of (COCl)2 at 248 nm obtaining a primary Cl2 elimination channel. A ratio of vibrational population is estimated to be 1:(0.12 ± 0.03):(0.011 ± 0.003) for the v = 0, 1, and 2 levels. The quantum yield of Cl2 molecular channel is obtained to be 0.8 ± 0.4 initiated from the X̃ 1Ag ground state surface (COCl)2 via internal conversion. The obtained total quantum yield is attributed to both primary ((COCl)2 + hν → 2CO + Cl2) and secondary reactions (dominated by Cl + COCl → Cl2 + CO). The former is estimated to share a yield of >0.14, while the latter contributes up to 0.66. The photodissociation pathway to the molecular products is calculated to proceed via a four-center transition state (TS) from which Cl2 is eliminated synchronously. Installation of the mirrors with reflectivity of 99.995% in the CRDS apparatus prolongs the ring-down time to 70 μs, thus allowing for the contribution from 17% up to 66% of the total Cl2 yield from secondary reaction depending on the reaction temperature. Despite uncertainty in determining the product yield, the primary Cl2 dissociation channel eliminated from (COCl)2 is observed for the first time. © 2017 American Chemical Society.

Veerakumar, P, Thanasekaran P, Lin K-C, Liu S-B.  2017.  Well-dispersed rhenium nanoparticles on three-dimensional carbon nanostructures: Efficient catalysts for the reduction of aromatic nitro compounds. Journal of Colloid and Interface Science. 506:271-282. AbstractWebsite

Rhenium nanoparticles (ReNPs) supported on ordered mesoporous carbon (OMC) as a catalyst (Re/OMC) through a solvent-evaporation induced self-assembly (ELSA) method were prepared. The synthesized heterogonous catalyst was fully characterized using X-ray diffraction, field emission transmission electron microscopy, N2 sorption, metal dispersion, thermogravimetric analysis, Raman, Fourier-transform infrared, and X-ray photon spectroscopies. In addition, the catalyst was applied to reduce the aromatic nitro compounds (ANCs) for the first time in aqueous media and the reactions were monitored by following the intensity changes in the UV–vis absorption spectra with respect to time. This method provides the advantages of obtaining a high rate constant (k), green reaction conditions, simple methodology, easy separation and easy workup procedures. Moreover, the catalyst can be easily recovered by centrifugation, recycled several times and reused without any loss of activity. The higher activity of this catalyst was attributed to higher dispersion and smaller particle size of ReNPs as observed from FE-TEM and XRD results. © 2017

Veerakumar, P, Thanasekaran P, Lin K-C, Liu S-B.  2017.  Biomass Derived Sheet-like Carbon/Palladium Nanocomposite: An Excellent Opportunity for Reduction of Toxic Hexavalent Chromium. ACS Sustainable Chemistry and Engineering. 5:5302-5312., Number 6 AbstractWebsite

Palladium nanoparticles (Pd NPs) immobilized on a garlic skin-derived activated carbons (GACs) is reported. The morphology, structure, surface compositions, and textural properties of the GACs and Pd@GAC catalyst were investigated by a variety of physicochemical characterization techniques, which revealed a dispersion of Pd NPs with average particle size of ca. 21 nm on sheet-like graphitized GACs with surface areas and pore volumes as high as 1836 m2 g-1 and 0.89 cm3 g-1, respectively. As a result, the Pd@GAC with a Pd loading of ca. 1-2 wt% exhibited superior activity for catalytic reduction of toxic Cr(VI) to Cr(III) surpassing most metal-based catalysts reported in the literature. As evidenced by a comprehensive UV-vis spectrophotometric study, the eco-friendly Pd@GAC catalyst reported herein, which can be facilely prepared with biowaste feedstocks, also showed excellent catalytic performances for efficient reduction of Cr(VI) with extraordinary stability and recyclability over at least five repeated catalytic test cycles. © 2017 American Chemical Society.

Veerakumar, P, Tharini J, Ramakrishnan M, Panneer Muthuselvam I, Lin K-C.  2017.  Graphene Oxide Nanosheets as An Efficient and Reusable Sorbents for Eosin Yellow Dye Removal from Aqueous Solutions. ChemistrySelect. 2:3598-3607., Number 13 AbstractWebsite

In this study, 2D graphene oxide nanosheets (GONS) were synthesized and characterized by XRD, Raman, SEM, FE-SEM, TEM, XPS, TGA, UV-vis and FTIR spectral techniques. The efficiency of eosin yellow (EY) dye adsorption on the GONS under various experimental parameters such as contact time, pH and temperature was investigated. Adsorption kinetic data were characterized appropriately using pseudo second-order-kinetics and intraparticle diffusion methods. Free energy of adsorption (ΔG0), enthalpy (ΔH0), entropy (ΔS0) changes, activation energy and Arrhenius factors were also calculated. The endothermic and spontaneous nature of the adsorption process was confirmed by the positive value of the enthalpy change (ΔH0) and the negative value of free energy change (ΔG0). The adsorption mechanism was investigated by FTIR spectra of GONS before and after adsorption of EY dye molecules. The remarkable adsorption capacity of EY onto the GONS can be attributed to the various adsorption interaction mechanisms such as hydrogen bonding, π-π electron, and electrostatic interactions. The maximum adsorption capacity for EY was calculated to be 217.33 mg g-1. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim