We have introduced a G-quadruplex-binding ligand, 3,6-bis(1-methyl-4-vinylpyridinium)carbazole diiodide (BMVC), to verify the major structure of d(T2AG3)4 (H24) in potassium solution and examine the structural conversion of H24 in sodium solution upon potassium titration. The studies of circular dichroism, induced circular dichroism, spectral titration and gel competition have allowed us to determine the binding mode and binding ratio of BMVC to the H24 in solution and eliminate the parallel form as the major G-quadruplex structure. Although the mixed-type form could not be eliminated as a main component, the basket and chair forms are more likely the main components of H24 in potassium solution. In addition, the circular dichroism spectra and the job plots reveal that a longer telomeric sequence d(T2AG3)13 (H78) could form two units of G4 structure both in sodium or potassium solutions. Of particular interest is that no appreciable change on the induced circular dichroism spectra of BMVC is found during the change of the circular dichroism patterns of H24 upon potassium titration. Considering similar spectral conversion detected for H24 and a long sequence H78 together with the G4 structure stabilized by BMVC, it is therefore unlikely that the rapid spectral conversion of H24 and H78 is due to structural change between different types of the G4 structures. With reference to the circular dichroism spectra of d(GAA)7 and d(GAAA)5, we suggest that the spectral conversion of H24 upon potassium titration is attributed to fast ion exchange resulting in different loop base interaction and various hydrogen bonding effects.

Using scanning-tunneling microscopy and first-principles total-energy calculations, we have considered the structural properties of the so-called doped clusters formed by depositing additional 0.05 monolayer of In onto the 4x3-periodicity magic-cluster array in the In/Si(100) system. Low-temperature STM observations have revealed that most of the doped clusters have an asymmetric shape. According to the total-energy calculations, these clusters have plausibly Si6In8 composition. In such a cluster, one of the In atoms is mobile and can hop between four equivalent sites within a cluster. The hopping between sites, located in the different 2ax3a halves of the cluster, is characterized by the barrier of about 0.7 eV, and this hopping becomes frozen at 55 K. In contrast, the hopping between the neighboring sites within the same cluster half persists up to very low temperatures, as the barrier height here is an order of magnitude lower. Due to the above structural properties, the doped asymmetric Si6In8 cluster can be treated as a promising switch, logic gate, or memory cell of the atomic-scale size.

A study of ion equilibration in annular regions of ultracold strontium plasmas is reported. Plasmas are formed by photoionizing laser-cooled atoms with a pulsed dye laser. The experimental probe is spatially-resolved absorption spectroscopy using the S-2(1/2)-P-2(1/2) transition of the Sr+ ion. The kinetic energy of the ions is calculated from the Doppler broadening of the spectrum, and it displays clear oscillations during the first microsecond after plasma formation. The oscillations, which are a characteristic of strong coulomb coupling, are fit with a simple phenomenological model incorporating damping and density variation in the plasma.

Fluorescence studies of 3,6-bis(1-methyl-4-vinylpyridinium) carbazole diiodide (BMVC) in glycerol/water mixtures allow us to elucidate the photophysical behavior of BMVC upon interaction with different DNA structures. The very weak fluorescence emission of BMVC in highly polar solvents of water is attributed to an increase in nonradiative decay due to the intramolecular twist of the vinyl group induced by charge transfer. Increasing the solvent viscosity and rigidity could lead to large changes in the barrier height and substantial effects on relaxation processes, and result in an enhancement of the fluorescence quantum yield. Similarly, different binding interactions of BMVC with various DNA could perturb the frictions of the reorientation of the vinyl group. We suggest that the intramolecular twist of the vinyl group of BMVC is mainly responsible for the distinct fluorescence emissions under different local environments. (c) 2006 Elsevier B.V. All rights reserved.

Different G-quadruplex structures for the human telomeric sequence d(T(2)AG(3))(4) in vitro have been documented in the presence of sodium and potassium. Verification of the G-quadruplex structures in human telomeres in vivo is the main issue in establishing the biological function of the G-quadruplex structures in telomeres as well as the development of anticancer agents. Here we have applied two-photon excitation fluorescence lifetime imaging microscopy to measure the fluorescence lifetime of the BMVC molecule upon interaction with various DNA structures. The distinction in lifetime measured with submicrometer spatial resolution in two-photon excitation fluorescence lifetime imaging microscopy provides a powerful approach not only to verify the existence of the antiparallel G-quadruplex structure in human telomeres but also to map its localizations in metaphase chromosomes.

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We have investigated the doubly excited 1,3 P o resonance states of helium embedded in weakly coupled plasmas. A screened Coulomb potential obtained from the Debye model is used to represent the interaction between the charge particles. A correlated wavefunction consisting of a generalized exponential expansion has been used to represent the correlation effect. A total of 18 resonances (9 each for 1 P o and 3 P o states) below the n = 2 He + thresholds has been estimated by calculating the density of states using a stabilization method. For each spin state, this includes four members in the 2s n p + (2 ≤ n ≤ 5) series, three members in the 2s n p − (3 ≤ n ≤ 5) series, and two members from 2p n d( n = 3, 4) series. The resonance energies and widths for various Debye parameters ranging from infinity to a small value for these 1,3 P o resonance states are reported. In addition, the wavelengths for the photo-absorption of a helium atom from its ground state to such 1 P o resonance states for different Debye lengths are also reported.

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We report the use of photoassociative spectroscopy to determine the ground-state s-wave scattering lengths for the main bosonic isotopes of strontium, Sr-86 and Sr-88. Photoassociative transitions are driven with a laser red detuned by up to 1400 GHz from the S-1(0)-P-1(1) atomic resonance at 461 nm. A minimum in the transition amplitude for Sr-86 at -494 +/- 5 GHz allows us to determine the scattering lengths 610a(0)< a(86)< 2300a(0) for Sr-86 and a much smaller value of -1a(0)< a(88)< 13a(0) for Sr-88.

Ultracold neutral plasmas are formed by photo-ionizing laser-cooled atoms near the ionization threshold. Through the application of atomic physics techniques and diagnostics, these experiments stretch the boundaries of traditional neutral plasma physics. The electron temperature in these plasmas ranges from 1 to 1000 K and the ion temperature is around 1 K. The density can approach 10(11) cm(-3). Fundamental interest stems from the possibility of creating strongly coupled plasmas, but recombination, collective modes, and thermalization in these systems have also been studied. Optical absorption images of a strontium plasma, using the Sr+ S-2(1/2) -> P-2(1/2) transition at 422 mn, depict the density profile of the plasma, and probe kinetics on a 50 ns time-scale. The Doppler-broadened ion absorption spectrum measures the ion velocity distribution, which gives an accurate measure of the ion dynamics in the first microsecond after photo-ionization.

We report photoassociative spectroscopy of Sr-88(2) in a magneto-optical trap operating on the S-1(0)-->P-3(1) intercombination line at 689 nm. Photoassociative transitions are driven with a laser red detuned by 600-2400 MHz from the S-1(0)-->P-1(1) atomic resonance at 461 nm. Photoassociation takes place at extremely large internuclear separation, and the photoassociative spectrum is strongly affected by relativistic retardation. A fit of the transition frequencies determines the P-1(1) atomic lifetime (tau=5.22+/-0.03 ns) and resolves a discrepancy between experiment and recent theoretical calculations.

Absorption imaging and spectroscopy can probe the dynamics of an ultracold neutral plasma during the first few microseconds after its creation. Quantitative analysis of the data, however, is complicated by the inhomogeneous density distribution, expansion of the plasma and possible lack of global thermal equilibrium for the ions. In this paper, we describe methods for addressing these issues. Using simple assumptions about the underlying temperature distribution and ion motion, the Doppler-broadened absorption spectrum obtained from plasma images can be related to the average temperature in the plasma.

Different cellular accumulations with distinct fluorescence properties of BMVC in cancer cells from normal cells allow us to establish a simple and economic method for the diagnosis of cancer cells. With using a light emitting diode to excite the BMVC molecule, microarray fluorescence analysis of a cell-based glass chip provides an easy method towards the detection of a limited number of cancer cells.

We report optical absorption imaging of ultracold neutral plasmas. Imaging allows direct observation of the ion density profile and expansion of the plasma. The frequency dependence of the plasma's optical depth gives the ion absorption spectrum, which is broadened by the ion motion. We use the spectral width to monitor ion equilibration in the first 250 ns after plasma formation. On a microsecond time scale, we observe the radial acceleration of ions resulting from pressure exerted by the trapped electron gas.